Factsheet for Bra039040.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY00107	Canola	nucleus	95.86	95.86
Bra025361.1-P	Field mustard	nucleus	86.09	87.39
Bra033067.1-P	Field mustard	nucleus	83.73	86.81
VIT_14s0108g00830.t01	Wine grape	nucleus	55.03	56.88
VIT_17s0000g06190.t01	Wine grape	nucleus	50.3	55.37
Bra030743.1-P	Field mustard	nucleus	41.42	52.83
Bra035893.1-P	Field mustard	nucleus	51.48	51.94
Bra029258.1-P	Field mustard	nucleus	52.37	51.6
Bra015899.1-P	Field mustard	nucleus	48.22	48.95
Bra018598.1-P	Field mustard	nucleus	39.94	47.87
Bra003793.1-P	Field mustard	nucleus	46.45	46.45
Bra008160.1-P	Field mustard	nucleus	44.97	44.84
Bra010085.1-P	Field mustard	nucleus	52.37	39.51
Bra000011.1-P	Field mustard	nucleus	18.64	18.16
Bra005177.1-P	Field mustard	nucleus	18.34	17.17

Protein Annotations

EnsemblPlants:Bra039040.1	EnsemblPlants:Bra039040.1-P	EnsemblPlantsGene:Bra039040	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR10641	PANTHER:PTHR10641:SF906	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI0002541C13	UniProt:M4FD70	MapMan:15.5.2.1	:	:

Description

AT3G28910 (E=4e-137) ATMYB30, MYB30 | MYB30 (MYB DOMAIN PROTEIN 30); DNA binding / transcription factor

Coordinates

chrA09:+:1474811..1476289

Molecular Weight (calculated)

37773.9 Da

IEP (calculated)

8.214

GRAVY (calculated)

-0.771

Length

338 amino acids

Sequence
(BLAST)

001: MVRPPCCDKG GVKKGPWTPE EDIILVTYIQ EHGPGNWRAV PTNTGLLRCS KSCRLRWTNY LRPGIKRGNF TEHEEKMIVH LQALLGNRWA AIASYLPQRT
101: DNDIKNYWNT HLKKKLNKAS QDSHQELDQS RDRSSISSSP SSSSANSNSY IPRGQWERRL QTDIHLAKKA LSEALSPAVA PIITSTLATT ATTSSSSESR
201: RSSSSTCWFL RVQETSTTYA SSTENIAKLL KGWVKTSPKT QNSADQKNPP DSETKELMKS DDVQKDCAGG FQAFSGLDHS NDCDSPYHQT KLSPDHETKQ
301: AITGCSNQSQ LSLFEKWLFE DFGGQIGDIL LDENPNFF

Best Arabidopsis Sequence Match ( AT3G28910.1 )
(BLAST)

001: MVRPPCCDKG GVKKGPWTPE EDIILVTYIQ EHGPGNWRAV PTNTGLLRCS KSCRLRWTNY LRPGIKRGNF TEHEEKMIVH LQALLGNRWA AIASYLPQRT
101: DNDIKNYWNT HLKKKLNKVN QDSHQELDRS SLSSSPSSSS ANSNSNISRG QWERRLQTDI HLAKKALSEA LSPAVAPIIT STVTTTSSSA ESRRSTSSAS
201: GFLRTQETST TYASSTENIA KLLKGWVKNS PKTQNSADQI ASTEVKEVIK SDDGKECAGA FQSFSEFDHS YQQAGVSPDH ETKPDITGCC SNQSQWSLFE
301: KWLFEDSGGQ IGDILLDENT NFF

Arabidopsis Description

MYB30Transcription factor MYB30 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCU7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.