Factsheet for Bra025361.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra021379.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G28910.1	Bra021379.1-P	AT3G03000.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86406	Canola	nucleus	99.7	99.7
CDX86405	Canola	nucleus	99.4	99.4
CDX85227	Canola	nucleus	99.4	99.4
AT3G28910.1	Thale cress	nucleus	87.69	90.4
Bra033067.1-P	Field mustard	nucleus	87.99	89.88
Bra039040.1-P	Field mustard	nucleus	87.39	86.09
VIT_14s0108g00830.t01	Wine grape	nucleus	56.76	57.8
VIT_17s0000g06190.t01	Wine grape	nucleus	52.55	57.0
Bra035893.1-P	Field mustard	nucleus	53.45	53.13
Bra030743.1-P	Field mustard	nucleus	41.74	52.45
Bra029258.1-P	Field mustard	nucleus	53.75	52.19
Bra015899.1-P	Field mustard	nucleus	48.35	48.35
Bra018598.1-P	Field mustard	nucleus	40.84	48.23
Bra003793.1-P	Field mustard	nucleus	47.15	46.45
Bra008160.1-P	Field mustard	nucleus	45.95	45.13
Bra010085.1-P	Field mustard	nucleus	53.15	39.51
Bra000011.1-P	Field mustard	nucleus	18.92	18.16
Bra005177.1-P	Field mustard	nucleus	18.92	17.45

Protein Annotations

EnsemblPlants:Bra025361.1	EnsemblPlants:Bra025361.1-P	EnsemblPlantsGene:Bra025361	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR10641	PANTHER:PTHR10641:SF906	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI000253FAEF	UniProt:M4E9A5	MapMan:15.5.2.1	:	:

Description

AT3G28910 (E=4e-118) ATMYB30, MYB30 | MYB30 (MYB DOMAIN PROTEIN 30); DNA binding / transcription factor

Coordinates

chrA06:-:21970737..21972209

Molecular Weight (calculated)

37069.0 Da

IEP (calculated)

7.500

GRAVY (calculated)

-0.677

Length

333 amino acids

Sequence
(BLAST)

001: MVRPPCCDKG GVKKGPWTPE EDIILVTYIQ EHGPGNWRAV PTNTGLLRCS KSCRLRWTNY LRPGIKRGNF TEHEEKMIVH LQALLGNRWA AIASYLPQRT
101: DNDIKNYWNT HLKKKLNKAN QDSHQDFDQS RDLSSSPSSS SANSNSNISR GQWERRLQTD IHLAKKALSE ALSPAVAPII TSTFATTATT SSSAESRRST
201: SSACRFLRTQ ETSTAYASST ENIAKLLKGW VKNSPKIPNS SDLMVSPDSE TKDVIKSDVE DCAGAFQSFS GFDHLKDCDS SYHQAGVSPD HETKPDITGC
301: SNQSQWSLFE KWLFEDSGGP IGDIVLDENP YFF

Best Arabidopsis Sequence Match ( AT3G28910.1 )
(BLAST)

001: MVRPPCCDKG GVKKGPWTPE EDIILVTYIQ EHGPGNWRAV PTNTGLLRCS KSCRLRWTNY LRPGIKRGNF TEHEEKMIVH LQALLGNRWA AIASYLPQRT
101: DNDIKNYWNT HLKKKLNKVN QDSHQELDRS SLSSSPSSSS ANSNSNISRG QWERRLQTDI HLAKKALSEA LSPAVAPIIT STVTTTSSSA ESRRSTSSAS
201: GFLRTQETST TYASSTENIA KLLKGWVKNS PKTQNSADQI ASTEVKEVIK SDDGKECAGA FQSFSEFDHS YQQAGVSPDH ETKPDITGCC SNQSQWSLFE
301: KWLFEDSGGQ IGDILLDENT NFF

Arabidopsis Description

MYB30Transcription factor MYB30 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCU7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.