CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY58544

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G28910.1	CDY58544	AT3G03000.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86406	Canola	nucleus	99.7	99.7
Bra025361.1-P	Field mustard	nucleus	99.4	99.4
CDX85227	Canola	nucleus	99.4	99.4
AT3G28910.1	Thale cress	nucleus	87.69	90.4
CDY44428	Canola	nucleus	88.29	90.18
CDY04044	Canola	nucleus	84.08	89.17
CDX93535	Canola	nucleus	22.22	89.16
CDY00107	Canola	nucleus	89.19	87.87
CDX95030	Canola	nucleus	28.83	84.21
VIT_14s0108g00830.t01	Wine grape	nucleus	56.46	57.49
VIT_17s0000g06190.t01	Wine grape	nucleus	52.25	56.68
CDY30719	Canola	nucleus	44.74	55.6
CDY00289	Canola	nucleus	45.95	55.23
CDY16773	Canola	nucleus	48.65	54.92
CDY69264	Canola	nucleus	53.15	53.31
CDX87250	Canola	nucleus	53.45	53.13
CDY31125	Canola	nucleus	41.74	52.45
CDY32135	Canola	nucleus	41.74	52.06
CDX73103	Canola	nucleus	48.35	48.64
CDX96557	Canola	nucleus	48.35	48.35
CDX68173	Canola	nucleus	46.25	47.68
CDX85848	Canola	nucleus	46.25	47.53
CDY64733	Canola	nucleus	14.71	23.67
CDX95031	Canola	nucleus, plastid	9.31	20.0
CDY07778	Canola	nucleus	18.92	18.16
CDX91374	Canola	nucleus	18.92	17.65
CDX79747	Canola	nucleus	18.32	17.53
CDX74943	Canola	nucleus	19.22	17.49

Protein Annotations

EnsemblPlants:CDX86405	EnsemblPlantsGene:GSBRNA2T00144540001	Gene3D:1.10.10.60	GO:A0A078DAY4	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR10641	PANTHER:PTHR10641:SF906	PFAM:PF00249	PFscan:PS51294	ProteinID:CDX86405	ProteinID:CDX86405.1
SEG:seg	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0004EEE539	MapMan:15.5.2.1	:

Description

BnaA06g31220D

Coordinates

chrLK031845:-:1398253..1399877

Molecular Weight (calculated)

37078.0 Da

IEP (calculated)

7.223

GRAVY (calculated)

-0.700

Length

333 amino acids

Sequence
(BLAST)

001: MVRPPCCDKG GVKKGPWTPE EDIILVTYIQ EHGPGNWRAV PTNTGLLRCS KSCRLRWTNY LRPGIKRGNF TEHEEKMIVH LQALLGNRWA AIASYLPQRT
101: DNDIKNYWNT HLKKKLNKAN QDSHQDFDQS RDLSSSPSSS SANSNSNISR GQWERRLQTD IHLAKKALSE ALSPAVAPII TSTFATTATT SSSAESRRST
201: SSACRFLRTQ ETSTAYASST ENIAKLLKGW VKNSPKIPNS SDLMVSPDSE TKDVIKSDVE DCAGEFQSFS GFDHLKDCDS SYHQAGVSPD HETKPDITGC
301: SNQSQWSLFE KWLFEDSGGP IGDIVLDENP NFF

Best Arabidopsis Sequence Match ( AT3G28910.1 )
(BLAST)

001: MVRPPCCDKG GVKKGPWTPE EDIILVTYIQ EHGPGNWRAV PTNTGLLRCS KSCRLRWTNY LRPGIKRGNF TEHEEKMIVH LQALLGNRWA AIASYLPQRT
101: DNDIKNYWNT HLKKKLNKVN QDSHQELDRS SLSSSPSSSS ANSNSNISRG QWERRLQTDI HLAKKALSEA LSPAVAPIIT STVTTTSSSA ESRRSTSSAS
201: GFLRTQETST TYASSTENIA KLLKGWVKNS PKTQNSADQI ASTEVKEVIK SDDGKECAGA FQSFSEFDHS YQQAGVSPDH ETKPDITGCC SNQSQWSLFE
301: KWLFEDSGGQ IGDILLDENT NFF

Arabidopsis Description

MYB30Transcription factor MYB30 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCU7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.