CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93535	Canola	nucleus	25.76	91.57
CDY30719	Canola	nucleus	83.05	91.42
Bra035893.1-P	Field mustard	nucleus	100.0	88.06
CDY00289	Canola	nucleus	81.69	87.0
CDX87250	Canola	nucleus	98.31	86.57
CDX95030	Canola	nucleus	32.88	85.09
CDY69264	Canola	nucleus	84.75	75.3
AT5G62470.2	Thale cress	nucleus	84.75	71.02
KRG94429	Soybean	nucleus	20.0	68.6
CDY31125	Canola	nucleus	45.42	50.57
CDY04044	Canola	nucleus	53.56	50.32
CDY32135	Canola	nucleus	45.42	50.19
KRH66212	Soybean	cytosol	25.42	49.67
CDY44428	Canola	nucleus	53.9	48.77
CDX86406	Canola	nucleus	54.92	48.65
CDX86405	Canola	nucleus	54.92	48.65
CDX85227	Canola	nucleus	54.58	48.35
CDX68173	Canola	nucleus	52.54	47.99
KRH01168	Soybean	nucleus	54.24	47.9
KRH40103	Soybean	nucleus	53.9	47.89
CDX85848	Canola	nucleus	52.54	47.84
CDX73103	Canola	nucleus	53.56	47.73
CDY00107	Canola	nucleus	54.58	47.63
CDX96557	Canola	nucleus	53.56	47.45
KRG93528	Soybean	nucleus	52.88	46.29
KRH18478	Soybean	nucleus	51.86	45.95
CDY64733	Canola	nucleus	18.31	26.09
CDX95031	Canola	nucleus, plastid	10.51	20.0
CDY07778	Canola	nucleus	18.98	16.14
CDX79747	Canola	nucleus	18.31	15.52
CDX91374	Canola	nucleus	18.64	15.41
CDX74943	Canola	nucleus	18.98	15.3

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	GO:A0A078FWG0	UniProt:A0A078FWG0	EnsemblPlants:CDY16773	ProteinID:CDY16773
ProteinID:CDY16773.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00094650001
InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641
PANTHER:PTHR10641:SF902	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0004EF021B	SEG:seg

Description

BnaA09g06090DBnaA09g06090D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FWG0]

Coordinates

chrLK032067:+:315586..317215

Molecular Weight (calculated)

32808.7 Da

IEP (calculated)

6.254

GRAVY (calculated)

-0.503

Length

295 amino acids

Sequence
(BLAST)

001: MGRPPCCEKT GVKKGPWTPE EDIILVSYIQ EHGPGNWRAV PTNTGLRRCS KSCRLRWTNY LRPGIKRGNF TEHEEKMIVH LQALLGNRWA AIASYLPERT
101: DNDIKNYWNT HLKKKLKKIN ESALCEALSL DKKPSSKFSP SSSSLSIIPQ NIPSFSSSSS TTTTITTTTQ CLSGVYASSA ENIARLLQDF MKDTPKSLTL
201: TSSSSPVSET GPLVSAATEE GGEGFEQSFF SFNSMEETHN LTQETSFFHD QESKPVITME QDPGLISQGS LSLFEKWLFD ENMVAMSLEG QEAMC

Best Arabidopsis Sequence Match ( AT5G62470.2 )
(BLAST)

001: MGRPPCCEKI GVKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTHTGLRRCS KSCRLRWTNY LRPGIKRGNF TEHEEKTIVH LQALLGNRWA AIASYLPERT
101: DNDIKNYWNT HLKKKLKKIN ESGEEDNDGV SSSNTSSQKN HQSTNKGQWE RRLQTDINMA KQALCEALSL DKPSSTLSSS SSLPTPVITQ QNIRNFSSAL
201: LDRCYDPSSS SSSTTTTTTS NTTNPYPSGV YASSAENIAR LLQDFMKDTP KALTLSSSSP VSETGPLTAA VSEEGGEGFE QSFFSFNSMD ETQNLTQETS
301: FFHDQVIKPE ITMDQDHGLI SQGSLSLFEK WLFDEQSHEM VGMALAGQEG MF

Arabidopsis Description

MYB96Transcription factor MYB96 [Source:UniProtKB/Swiss-Prot;Acc:Q24JK1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.