CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra035893.1-P	Field mustard	nucleus	98.51	98.51
CDY16773	Canola	nucleus	86.57	98.31
CDY30719	Canola	nucleus	73.43	91.79
CDX93535	Canola	nucleus	22.69	91.57
CDY00289	Canola	nucleus	72.54	87.73
CDY69264	Canola	nucleus	84.78	85.54
CDX95030	Canola	nucleus	28.96	85.09
AT5G62470.2	Thale cress	nucleus	84.78	80.68
KRG94429	Soybean	nucleus	17.61	68.6
CDY04044	Canola	nucleus	52.24	55.73
CDY44428	Canola	nucleus	52.54	53.99
CDX86405	Canola	nucleus	53.13	53.45
CDX86406	Canola	nucleus	53.13	53.45
KRH40103	Soybean	nucleus	52.84	53.31
CDX85227	Canola	nucleus	52.84	53.15
KRH01168	Soybean	nucleus	52.84	52.99
CDY00107	Canola	nucleus	53.13	52.66
CDX73103	Canola	nucleus	51.94	52.57
CDX68173	Canola	nucleus	50.45	52.32
CDX96557	Canola	nucleus	51.94	52.25
CDX85848	Canola	nucleus	50.45	52.16
KRG93528	Soybean	nucleus	51.94	51.63
CDY31125	Canola	nucleus	40.6	51.32
KRH18478	Soybean	nucleus	50.75	51.05
CDY32135	Canola	nucleus	40.6	50.94
KRH66212	Soybean	cytosol	22.69	50.33
CDY64733	Canola	nucleus	20.3	32.85
CDX95031	Canola	nucleus, plastid	9.25	20.0
CDY07778	Canola	nucleus	17.61	17.0
CDX79747	Canola	nucleus	17.01	16.38
CDX91374	Canola	nucleus	17.31	16.25
CDX74943	Canola	nucleus	17.61	16.12

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	GO:A0A078DDF3	UniProt:A0A078DDF3	EnsemblPlants:CDX87250	ProteinID:CDX87250
ProteinID:CDX87250.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00146190001
InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641
PANTHER:PTHR10641:SF902	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0004EDD141	SEG:seg

Description

BnaC09g05650DBnaC09g05650D protein [Source:UniProtKB/TrEMBL;Acc:A0A078DDF3]

Coordinates

chrLK031849:-:1407518..1409359

Molecular Weight (calculated)

37373.9 Da

IEP (calculated)

6.712

GRAVY (calculated)

-0.652

Length

335 amino acids

Sequence
(BLAST)

001: MGRPPCCEKT GVKKGPWTPE EDIILVSYIQ EHGPGNWRAV PTNTGLRRCS KSCRLRWTNY LRPGIKRGNF TEHEEKMIVH LQALLGNRWA AIASYLPERT
101: DNDIKNYWNT HLKKKLKKIN ESGEEDNDGF TSSHTISQKQ HHSSNKGQWE RRLQTDINMA KQALCEALSL DKKPSSKLSP SSSSLSIIPQ NIPSFSSSSS
201: TTTTITTTTQ CLSGVYASSA ENIARLLQDF MKDTPKTLTL TSSSSPVSET GPLVSAATEE GGEGFEQSFF SFNSMEETQN LTQKTSFFHD QESKPVITME
301: QDPGLISQGS LSLFEKWLFD ENMVGMSLEG QEAMC

Best Arabidopsis Sequence Match ( AT5G62470.2 )
(BLAST)

001: MGRPPCCEKI GVKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTHTGLRRCS KSCRLRWTNY LRPGIKRGNF TEHEEKTIVH LQALLGNRWA AIASYLPERT
101: DNDIKNYWNT HLKKKLKKIN ESGEEDNDGV SSSNTSSQKN HQSTNKGQWE RRLQTDINMA KQALCEALSL DKPSSTLSSS SSLPTPVITQ QNIRNFSSAL
201: LDRCYDPSSS SSSTTTTTTS NTTNPYPSGV YASSAENIAR LLQDFMKDTP KALTLSSSSP VSETGPLTAA VSEEGGEGFE QSFFSFNSMD ETQNLTQETS
301: FFHDQVIKPE ITMDQDHGLI SQGSLSLFEK WLFDEQSHEM VGMALAGQEG MF

Arabidopsis Description

MYB96Transcription factor MYB96 [Source:UniProtKB/Swiss-Prot;Acc:Q24JK1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.