CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68173	Canola	nucleus	95.68	95.98
CDX93535	Canola	nucleus	21.91	85.54
CDX95030	Canola	nucleus	28.7	81.58
CDX73103	Canola	nucleus	82.41	80.66
CDX96557	Canola	nucleus	81.48	79.28
AT1G74650.1	Thale cress	nucleus	80.25	78.79
CDY64733	Canola	nucleus	44.44	69.57
KRH63348	Soybean	nucleus	54.63	55.49
CDY30719	Canola	nucleus	45.06	54.48
KRH56914	Soybean	nucleus	52.78	53.6
KRH54550	Soybean	nucleus	54.94	53.45
CDY16773	Canola	nucleus	47.84	52.54
KRH03474	Soybean	nucleus	52.16	52.0
CDY31125	Canola	nucleus	41.98	51.32
CDY32135	Canola	nucleus	42.28	51.31
CDY00289	Canola	nucleus	43.52	50.9
CDY69264	Canola	nucleus	51.85	50.6
CDX87250	Canola	nucleus	52.16	50.45
PGSC0003DMT400083076	Potato	nucleus	57.1	49.33
Solyc06g069850.2.1	Tomato	nucleus	56.79	48.81
CDY04044	Canola	nucleus	45.68	47.13
CDX86406	Canola	nucleus	47.53	46.25
CDX86405	Canola	nucleus	47.53	46.25
CDY44428	Canola	nucleus	46.3	46.01
CDX85227	Canola	nucleus	47.22	45.95
CDY00107	Canola	nucleus	47.84	45.86
CDY07778	Canola	nucleus	18.52	17.29
CDX79747	Canola	nucleus	18.21	16.95
CDX91374	Canola	nucleus	18.52	16.81
CDX74943	Canola	nucleus	18.83	16.67
CDX95031	Canola	nucleus, plastid	7.1	14.84

Protein Annotations

EnsemblPlants:CDX85848	EnsemblPlantsGene:GSBRNA2T00143636001	Gene3D:1.10.10.60	GO:A0A078DEW4	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR10641	PANTHER:PTHR10641:SF922	PFAM:PF00249	PFscan:PS51294	ProteinID:CDX85848	ProteinID:CDX85848.1
SEG:seg	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0004EE3736	MapMan:15.5.2.1	:

Description

BnaC06g22860D

Coordinates

chrLK031843:+:276951..278692

Molecular Weight (calculated)

36275.0 Da

IEP (calculated)

6.100

GRAVY (calculated)

-0.841

Length

324 amino acids

Sequence
(BLAST)

001: MGRQPCCEKM EVKKGPWTPE EDIILVSYIQ QHGPGSWRCV PRNTGLLRCS KSCRLRWTNY LRPGIKRGNF TEHEDKTIIH LQALLGNRWA AIASYLPQRT
101: DNDIKNYWNT HLKKKLNLQQ MSSCDNNNNT NRRSVNKGQW EKKLQTDINM AKQALFQALS LDQASSSITP DPDSPKPHDH HSTTAIYASS TDNISKLLQN
201: WTSSSSLMPN TSSLSNNRSS STGEGGVLDH QCSLFSPNSE SGSVDERLNI MTETNIFKGE SKSNVDREAT NNVTTDDPAG SLSLIEQWLY DDQGLVDQCD
301: DVQEDLIDVS LEGKNNGNNG QDLS

Best Arabidopsis Sequence Match ( AT1G74650.1 )
(BLAST)

001: MGRPPCCEKI EVKKGPWTPE EDIILVSYIQ QHGPGNWRSV PANTGLLRCS KSCRLRWTNY LRPGIKRGNF TQPEEKMIIH LQALLGNRWA AIASYLPQRT
101: DNDIKNYWNT HLKKKLVMMK FQNGIINENK TNLATDISSC NNNNNGCNHN KRTTNKGQWE KKLQTDINMA KQALFQALSL DQPSSLIPPD PDSPKPHHHS
201: TTTYASSTDN ISKLLQNWTS SSSSKPNTSS VSNNRSSSPG EGGLFDHHSL FSSNSESGSV DEKLNLMSET SMFKGESKPD IDMEATPTTT TTDDQGSLSL
301: IEKWLFDDQG LVQCDDSQED LIDVSLEELK

Arabidopsis Description

ATY13At1g74650 [Source:UniProtKB/TrEMBL;Acc:Q9CA52]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.