Factsheet for VIT_08s0007g00410.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0340g00090.t01
VIT_00s1247g00010.t01
VIT_02s0012g01920.t01
VIT_02s0012g01930.t01
VIT_07s0197g00020.t01
VIT_07s0197g00030.t01
VIT_07s0197g00040.t01
VIT_14s0068g00240.t01
VIT_16s0022g02050.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37630.1	VIT_02s0012g01920.t01	AT1G32230.1	19548978
AT2G37630.1	VIT_02s0012g01930.t01	AT1G32230.1	19548978
AT2G37630.1	VIT_00s0340g00090.t01	AT1G65620.1	19228338
AT2G37630.1	VIT_14s0068g00240.t01	AT3G29390.1	16243907
AT2G37630.1	VIT_00s1247g00010.t01	AT5G66870.1	16243907
AT2G37630.1	VIT_07s0197g00020.t01	AT5G66870.1	16243907
AT2G37630.1	VIT_07s0197g00030.t01	AT5G66870.1	16243907
AT2G37630.1	VIT_07s0197g00040.t01	AT5G66870.1	16243907
AT2G37630.1	VIT_16s0022g02050.t01	AT5G66870.1	16243907

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG99949	Soybean	nucleus	81.56	81.79
KRH49100	Soybean	nucleus	80.73	80.06
Solyc09g010840.1.1	Tomato	nucleus	80.17	79.72
PGSC0003DMT400022771	Potato	nucleus	79.33	78.67
KRH66092	Soybean	nucleus	74.58	74.79
GSMUA_Achr7P10550_001	Banana	nucleus	63.69	74.51
KRG99521	Soybean	nucleus	72.35	73.58
Bra000011.1-P	Field mustard	nucleus	70.95	73.2
CDY07778	Canola	nucleus	70.95	73.2
HORVU7Hr1G077530.1	Barley	mitochondrion, nucleus	33.24	71.69
CDX79747	Canola	nucleus	69.55	71.55
CDX91374	Canola	nucleus	71.23	71.43
AT2G37630.1	Thale cress	nucleus	72.91	71.12
GSMUA_Achr9P28330_001	Banana	nucleus	63.41	70.5
Bra005177.1-P	Field mustard	nucleus	70.67	70.08
CDX74943	Canola	nucleus	70.67	69.13
TraesCS5A01G079100.1	Wheat	nucleus	63.69	66.47
TraesCS5D01G093100.1	Wheat	mitochondrion, nucleus	64.8	64.27
TraesCS5B01G086900.1	Wheat	mitochondrion, nucleus	64.8	63.91
HORVU5Hr1G021230.1	Barley	mitochondrion, nucleus	64.53	63.81
GSMUA_Achr9P03320_001	Banana	nucleus	48.6	63.04
Os12t0572000-01	Rice	nucleus	59.78	62.57
Zm00001d030737_P001	Maize	nucleus	60.06	58.11
EES17234	Sorghum	nucleus	61.45	57.74
VIT_14s0083g00120.t01	Wine grape	nucleus	53.35	49.74
HORVU5Hr1G112000.2	Barley	extracellular, nucleus	36.31	44.07
GSMUA_Achr5P29070_001	Banana	nucleus	64.25	39.12
HORVU6Hr1G071420.2	Barley	plastid	18.16	35.33
VIT_17s0000g06190.t01	Wine grape	nucleus	21.23	24.76
VIT_14s0108g00830.t01	Wine grape	nucleus	21.79	23.85
VIT_08s0056g00800.t01	Wine grape	nucleus	16.76	18.69

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100256209	wikigene:100256209	MapMan:15.5.2.1	EMBL:AM474349	EMBL:AM477802
EMBL:AM478873	ProteinID:CAN64074	ProteinID:CAN64074.1	ProteinID:CAN66259	ProteinID:CAN66259.1	ProteinID:CAN83668
ProteinID:CAN83668.1	ProteinID:CCB55587	ProteinID:CCB55587.1	ncoils:Coil	UniProt:F6HLC3	EMBL:FN595991
GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006357	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009653	GO:GO:0009987	GO:GO:0010338	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212
InterPro:Homeobox-like_sf	InterPro:IPR017930	EntrezGene:LOC100256209	wikigene:LOC100256209	InterPro:Myb_dom	PFAM:PF13921
PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF457	InterPro:RS2/AS1	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	TIGR:TC67088	UniParc:UPI00015CA0B9	ArrayExpress:VIT_08s0007g00410	EnsemblPlantsGene:VIT_08s0007g00410	EnsemblPlants:VIT_08s0007g00410.t01
unigene:Vvi.13868	unigene:Vvi.15885	RefSeq:XP_002266427	RefSeq:XP_002266427.1	SEG:seg	:

Description

No Description!

Coordinates

chr8:-:14715920..14719316

Molecular Weight (calculated)

41285.5 Da

IEP (calculated)

10.008

GRAVY (calculated)

-0.884

Length

358 amino acids

Sequence
(BLAST)

001: MKERQRWRAE EDALLRAYVR QYGPREWNLV SQRMNTPLGR DAKSCLERWK NYLRPGIKKG SLTEEEQRLV IRLQAKHGNK WKKIAAEVPG RTAKRLGKWW
101: EVFKEKQQRE QKENNKVVDP IEEGKYDRIL ETFAEKLVKE RPAPAFLMAT SNGNFLHPDP PAPPPPTLLP PWLSNSNCTS TVRPPSPSVT LSLCPSTVAT
201: SPTIPWLQPE RGPDATPLVL GNLPPHGAVP TSGENLLISE LVECCRELEE GHRAWAAHKK EAAWRLRRVE LQLESEKACR RREKMEEIES KVKALREEQK
301: ATLDRIEAEY REQLAGLRRD AESKEQKLAE QWSAKHLRLT RFIEQMGCRP RLAEPNGR

Best Arabidopsis Sequence Match ( AT2G37630.1 )
(BLAST)

001: MKERQRWSGE EDALLRAYVR QFGPREWHLV SERMNKPLNR DAKSCLERWK NYLKPGIKKG SLTEEEQRLV IRLQEKHGNK WKKIAAEVPG RTAKRLGKWW
101: EVFKEKQQRE EKESNKRVEP IDESKYDRIL ESFAEKLVKE RSNVVPAAAA AATVVMANSN GGFLHSEQQV QPPNPVIPPW LATSNNGNNV VARPPSVTLT
201: LSPSTVAAAA PQPPIPWLQQ QQPERAENGP GGLVLGSMMP SCSGSSESVF LSELVECCRE LEEGHRAWAD HKKEAAWRLR RLELQLESEK TCRQREKMEE
301: IEAKMKALRE EQKNAMEKIE GEYREQLVGL RRDAEAKDQK LADQWTSRHI RLTKFLEQQM GCRLDRP

Arabidopsis Description

AS1Transcription factor AS1 [Source:UniProtKB/Swiss-Prot;Acc:O80931]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.