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Maize
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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus
MultiLoc:nucleus
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
 nucleus: 12750468
gfp PMID: 12750468 doi
G Theodoris, N Inada, M Freeling
Department of Plant and Microbial Biology, University of California, Berkeley 94720, USA.
PPI

Inferred distinct locusB in Crop

locusBlocations
Zm00001d010264_P001
Zm00001d012821_P003
Zm00001d013732_P001
Zm00001d014423_P002
Zm00001d028208_P009
Zm00001d030110_P001
Zm00001d033335_P001
Zm00001d038197_P001
Zm00001d042560_P002
Zm00001d047521_P001

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G37630.1 Zm00001d012821_P003 AT1G32230.1 19548978
AT2G37630.1 Zm00001d014423_P002 AT1G32230.1 19548978
AT2G37630.1 Zm00001d030110_P001 AT1G32230.1 19548978
AT2G37630.1 Zm00001d010264_P001 AT1G65620.1 19228338
AT2G37630.1 Zm00001d038197_P001 AT1G65620.1 19228338
AT2G37630.1 Zm00001d042560_P002 AT1G65620.1 19228338
AT2G37630.1 Zm00001d047521_P001 AT1G65620.1 19228338
AT2G37630.1 Zm00001d028208_P009 AT3G29390.1 16243907
AT2G37630.1 Zm00001d013732_P001 AT5G66870.1 16243907
AT2G37630.1 Zm00001d033335_P001 AT5G66870.1 16243907
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EES17234 Sorghum nucleus 90.0 87.4
HORVU7Hr1G077530.1 Barley mitochondrion, nucleus 37.03 82.53
TraesCS5A01G079100.1 Wheat nucleus 71.08 76.68
TraesCS5D01G093100.1 Wheat mitochondrion, nucleus 72.16 73.96
TraesCS5B01G086900.1 Wheat mitochondrion, nucleus 72.16 73.55
HORVU5Hr1G021230.1 Barley mitochondrion, nucleus 71.62 73.2
Os12t0572000-01 Rice nucleus 64.59 69.88
GSMUA_Achr7P10550_001 Banana nucleus 54.32 65.69
GSMUA_Achr9P28330_001 Banana nucleus 55.41 63.66
GSMUA_Achr9P03320_001 Banana nucleus 44.86 60.14
VIT_08s0007g00410.t01 Wine grape nucleus 58.11 60.06
KRG99949 Soybean nucleus 56.76 58.82
KRH49100 Soybean nucleus 56.49 57.89
CDY07778 Canola nucleus 53.51 57.06
Bra000011.1-P Field mustard nucleus 53.51 57.06
KRG99521 Soybean nucleus 53.78 56.53
Solyc09g010840.1.1 Tomato nucleus 54.86 56.39
KRH66092 Soybean nucleus 53.78 55.74
PGSC0003DMT400022771 Potato nucleus 54.32 55.68
CDX79747 Canola nucleus 52.16 55.46
CDX91374 Canola nucleus 52.7 54.62
AT2G37630.1 Thale cress nucleus 53.51 53.95
Bra005177.1-P Field mustard nucleus 52.43 53.74
CDX74943 Canola nucleus 52.7 53.28
HORVU5Hr1G112000.2 Barley extracellular, nucleus 42.16 52.88
HORVU6Hr1G071420.2 Barley plastid 20.27 40.76
GSMUA_Achr5P29070_001 Banana nucleus 57.03 35.88
Zm00001d020457_P001 Maize nucleus 19.19 23.51
Zm00001d032179_P001 Maize nucleus 17.84 22.07
Zm00001d032178_P001 Maize nucleus 17.57 21.96
Zm00001d005760_P001 Maize nucleus 18.92 21.47
Zm00001d022227_P002 Maize nucleus 18.65 20.91
Zm00001d053124_P001 Maize nucleus 15.68 20.07
Zm00001d047182_P001 Maize nucleus 17.03 19.81
Zm00001d023282_P001 Maize nucleus 15.41 19.72
Zm00001d023284_P001 Maize nucleus 14.86 19.3
Zm00001d023287_P001 Maize nucleus 14.59 18.06
Zm00001d052397_P001 Maize nucleus 14.59 15.84
Protein Annotations
Gene3D:1.10.10.60MapMan:15.5.2.1EntrezGene:542488UniProt:A0A1R3LYQ0ProteinID:AAD25082.1EMBL:AF143447
ncoils:CoilGO:GO:0000793GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0005488
GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005730
GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0006950GO:GO:0007275GO:GO:0008150
GO:GO:0008152GO:GO:0008356GO:GO:0009058GO:GO:0009605GO:GO:0009607GO:GO:0009615
GO:GO:0009628GO:GO:0009651GO:GO:0009653GO:GO:0009719GO:GO:0009733GO:GO:0009739
GO:GO:0009751GO:GO:0009753GO:GO:0009944GO:GO:0009965GO:GO:0009987GO:GO:0010338
GO:GO:0042742GO:GO:0042803GO:GO:0043565GO:GO:0045088GO:GO:0045892GO:GO:0046686
GO:GO:0050832InterPro:Homeobox-like_sfInterPro:IPR017930InterPro:Myb_domProteinID:ONM01442.1PFAM:PF13921
PFscan:PS51294PANTHER:PTHR10641PANTHER:PTHR10641:SF457UniProt:Q9S7B2InterPro:RS2/AS1InterPro:SANT/Myb
SMART:SM00717SUPFAM:SSF46689UniParc:UPI00000AB8DDEnsemblPlantsGene:Zm00001d030737EnsemblPlants:Zm00001d030737_P001EnsemblPlants:Zm00001d030737_T001
SEG:seg:::::
Description
rough sheath2Protein rough sheath 2
Coordinates
chr1:-:156875930..156877042
Molecular Weight (calculated)
41921.0 Da
IEP (calculated)
10.099
GRAVY (calculated)
-0.814
Length
370 amino acids
Sequence
(BLAST)
001: MKERQRWRPE EDAVLRAYVR QYGPREWHLV SQRMNVALDR DAKSCLERWK NYLRPGIKKG SLTEEEQRLV IRLQAKHGNK WKKIAAEVPG RTAKRLGKWW
101: EVFKEKQQRE LRDSRRPPPE PSPDERGRYE WLLENFAEKL VGERPQQAAA APSPLLMAAP VLPPWLSSNA GPAAAAAAAV AHPPPRPPSP SVTLSLASAA
201: VAPGPPAPAP WMPDRAAADA APYGFPSPSQ HGGAAPPGMA VVDGQALAEL AECCRELEEG RRAWAAHRRE AAWRLKRVEQ QLEMEREMRR REVWEEFEAK
301: MRTMRLEQAA AAERVERDHR EKVAELRRDA QVKEEKMAEQ WAAKHARVAK FVEQMGGCSR SWSSATDMNC
Best Arabidopsis Sequence Match ( AT2G37630.1 )
(BLAST)
001: MKERQRWSGE EDALLRAYVR QFGPREWHLV SERMNKPLNR DAKSCLERWK NYLKPGIKKG SLTEEEQRLV IRLQEKHGNK WKKIAAEVPG RTAKRLGKWW
101: EVFKEKQQRE EKESNKRVEP IDESKYDRIL ESFAEKLVKE RSNVVPAAAA AATVVMANSN GGFLHSEQQV QPPNPVIPPW LATSNNGNNV VARPPSVTLT
201: LSPSTVAAAA PQPPIPWLQQ QQPERAENGP GGLVLGSMMP SCSGSSESVF LSELVECCRE LEEGHRAWAD HKKEAAWRLR RLELQLESEK TCRQREKMEE
301: IEAKMKALRE EQKNAMEKIE GEYREQLVGL RRDAEAKDQK LADQWTSRHI RLTKFLEQQM GCRLDRP
Arabidopsis Description
AS1Transcription factor AS1 [Source:UniProtKB/Swiss-Prot;Acc:O80931]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.