Factsheet for Zm00001d032178_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P16920_001	Banana	nucleus	29.05	76.11
EES13899	Sorghum	nucleus	76.01	73.53
Zm00001d032179_P001	Maize	nucleus	68.58	67.89
Os08t0437300-00	Rice	nucleus	52.7	59.54
GSMUA_Achr7P21010_001	Banana	nucleus	49.66	54.65
GSMUA_Achr6P10700_001	Banana	nucleus	46.96	54.3
GSMUA_Achr2P22010_001	Banana	nucleus	45.61	53.36
GSMUA_Achr8P01400_001	Banana	nucleus	46.96	52.85
GSMUA_Achr4P00480_001	Banana	nucleus	47.3	52.83
Zm00001d020457_P001	Maize	nucleus	53.38	52.32
GSMUA_Achr6P02690_001	Banana	nucleus	42.91	50.8
Zm00001d005760_P001	Maize	nucleus	54.39	49.39
GSMUA_Achr7P18080_001	Banana	nucleus	44.93	49.26
Zm00001d047182_P001	Maize	nucleus	48.65	45.28
Zm00001d022227_P002	Maize	nucleus	48.65	43.64
Zm00001d023282_P001	Maize	nucleus	42.57	43.6
Os07t0484700-01	Rice	nucleus	23.65	41.92
Zm00001d052397_P001	Maize	nucleus	44.26	38.42
Zm00001d053124_P001	Maize	nucleus	37.5	38.41
Zm00001d023284_P001	Maize	nucleus	35.81	37.19
Zm00001d023287_P001	Maize	nucleus	36.49	36.12
Zm00001d030737_P001	Maize	nucleus	21.96	17.57

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100193481	MapMan:15.5.2.1	UniProt:B4FF61	EMBL:BT035749	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	EMBL:KJ727881
InterPro:Myb_dom	ProteinID:ONM04523.1	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF715
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0001A595B0	EnsemblPlantsGene:Zm00001d032178	EnsemblPlants:Zm00001d032178_P001
EnsemblPlants:Zm00001d032178_T001	SEG:seg	:	:	:	:

Description

MYB-transcription factor 83Transcription factor MYB30

Coordinates

chr1:+:215896905..215898543

Molecular Weight (calculated)

32036.0 Da

IEP (calculated)

8.283

GRAVY (calculated)

-0.523

Length

296 amino acids

Sequence
(BLAST)

001: MGRPPCCEKA GLKKGPWSPE EDLLLVSYVQ EHGPGNWRAV PCSTGLMRCS KSCRLRWTNY LRPGIKRGSF SDQEEKLIIH LQELLGNKWS AIASYLPERT
101: DNDIKNYWNT HLKKKLAKTG ARESGASAKT TKKSDRAAAP KGQWERRLQT NIHTARQALR EALSMDDTAP PAIKPEPLPL PLGQLPAPAS QAMYASSIDN
201: IARLLEGWMR PSVSGNASAE SMSSFSAFSG GGDGASASHI GTAHTPEGFT GTRKEEGAGP GPASLPMFEN WLLDDGMGNG DASLICVPLA DPCEFF

Best Arabidopsis Sequence Match ( AT3G28910.1 )
(BLAST)

001: MVRPPCCDKG GVKKGPWTPE EDIILVTYIQ EHGPGNWRAV PTNTGLLRCS KSCRLRWTNY LRPGIKRGNF TEHEEKMIVH LQALLGNRWA AIASYLPQRT
101: DNDIKNYWNT HLKKKLNKVN QDSHQELDRS SLSSSPSSSS ANSNSNISRG QWERRLQTDI HLAKKALSEA LSPAVAPIIT STVTTTSSSA ESRRSTSSAS
201: GFLRTQETST TYASSTENIA KLLKGWVKNS PKTQNSADQI ASTEVKEVIK SDDGKECAGA FQSFSEFDHS YQQAGVSPDH ETKPDITGCC SNQSQWSLFE
301: KWLFEDSGGQ IGDILLDENT NFF

Arabidopsis Description

MYB30Transcription factor MYB30 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCU7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.