CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d032178_P001	Maize	nucleus	73.53	76.01
GSMUA_Achr8P16920_001	Banana	nucleus	27.12	73.45
EES13898	Sorghum	nucleus	68.3	68.75
Os08t0437300-00	Rice	nucleus	47.71	55.73
GSMUA_Achr6P10700_001	Banana	nucleus	44.77	53.52
OQU93155	Sorghum	nucleus	23.2	53.38
GSMUA_Achr7P21010_001	Banana	nucleus	45.42	51.67
GSMUA_Achr8P01400_001	Banana	nucleus	43.46	50.57
GSMUA_Achr4P00480_001	Banana	nucleus	43.79	50.57
GSMUA_Achr2P22010_001	Banana	nucleus	41.18	49.8
GSMUA_Achr7P18080_001	Banana	nucleus	42.81	48.52
GSMUA_Achr6P02690_001	Banana	nucleus	39.22	48.0
KXG35628	Sorghum	nucleus	50.98	47.56
KXG39272	Sorghum	nucleus	45.42	43.57
Os07t0484700-01	Rice	nucleus	23.2	42.52
OQU90312	Sorghum	nucleus	44.44	41.46
KXG22874	Sorghum	nucleus	38.56	36.99
EES09957	Sorghum	nucleus	35.62	36.82
KXG22875	Sorghum	nucleus	36.6	35.11
OQU82780	Sorghum	nucleus	40.2	32.11
EES17234	Sorghum	nucleus	20.59	16.54

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EntrezGene:8077831	UniProt:C5YLA0	EnsemblPlants:EES13899	ProteinID:EES13899
ProteinID:EES13899.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF715	InterPro:SANT/Myb	SMART:SM00717
EnsemblPlantsGene:SORBI_3007G138900	SUPFAM:SSF46689	UniParc:UPI0001A878F4	RefSeq:XP_002444404.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr7:+:56660091..56661733

Molecular Weight (calculated)

32645.7 Da

IEP (calculated)

6.885

GRAVY (calculated)

-0.446

Length

306 amino acids

Sequence
(BLAST)

001: MGRPPCCEKS GVKKGPWSPE EDLLLVSYVQ EHGPENWRAV PSNTGLMRCS KSCRLRWTNY LRPGIKRGNF SDQEEKLIIE LQALLGNKWS TIASYMRDRT
101: DNDIKNYWNT HLRKKLAKTC ASESGASGGS AKTKGDGAAA PAPAPKGQWE RQLQTDMHTA RQALQEALSI DTAPPPPAAI KPEPLPLAQL PAPALSPAMY
201: ACSIENVVRV LELWMQRSAS EKASAQSMTS ISAVSGGGEG GSGSQSGTAR ALEGFTGMTK VDGAGGAGPG PSSSLPMLES WLLDDGMGHG DEGLFCVPLA
301: DPCEFF

Best Arabidopsis Sequence Match ( AT3G47600.1 )
(BLAST)

001: MGRPPCCDKI GVKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTHTGLRRCS KSCRLRWTNY LRPGIKRGNF TEHEEKMILH LQALLGNRWA AIASYLPERT
101: DNDIKNYWNT HLKKKLKKMN DSCDSTINNG LDNKDFSISN KNTTSHQSSN SSKGQWERRL QTDINMAKQA LCDALSIDKP QNPTNFSIPD LGYGPSSSSS
201: STTTTTTTTR NTNPYPSGVY ASSAENIARL LQNFMKDTPK TSVPLPVAAT EMAITTAASS PSTTEGDGEG IDHSLFSFNS IDEAEEKPKL IDHDINGLIT
301: QGSLSLFEKW LFDEQSHDMI INNMSLEGQE VLF

Arabidopsis Description

MYB94Transcription factor MYB94 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN78]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.