Factsheet for Zm00001d047182_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG39272	Sorghum	nucleus	81.76	81.5
GSMUA_Achr8P16920_001	Banana	nucleus	27.36	76.99
OQU93155	Sorghum	nucleus	27.99	66.92
GSMUA_Achr6P10700_001	Banana	nucleus	41.2	51.17
GSMUA_Achr8P01400_001	Banana	nucleus	42.14	50.95
GSMUA_Achr2P22010_001	Banana	nucleus	39.94	50.2
GSMUA_Achr7P21010_001	Banana	nucleus	42.14	49.81
GSMUA_Achr4P00480_001	Banana	nucleus	41.51	49.81
Zm00001d032179_P001	Maize	nucleus	46.54	49.5
GSMUA_Achr6P02690_001	Banana	nucleus	38.36	48.8
Zm00001d032178_P001	Maize	nucleus	45.28	48.65
Zm00001d020457_P001	Maize	nucleus	45.91	48.34
Zm00001d022227_P002	Maize	nucleus	50.0	48.18
GSMUA_Achr7P18080_001	Banana	nucleus	39.62	46.67
Zm00001d005760_P001	Maize	nucleus	46.54	45.4
Zm00001d023282_P001	Maize	nucleus	38.36	42.21
Zm00001d053124_P001	Maize	nucleus	35.85	39.45
Zm00001d023284_P001	Maize	nucleus	33.96	37.89
Zm00001d023287_P001	Maize	nucleus	35.53	37.79
Zm00001d052397_P001	Maize	nucleus	40.25	37.54
CDY64733	Canola	nucleus	12.89	19.81
Zm00001d030737_P001	Maize	nucleus	19.81	17.03

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100282932	MapMan:15.5.2.1	ProteinID:AQL05818.1	UniProt:B6TCY3	EMBL:EU962848
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930
InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF715	InterPro:SANT/Myb
SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI000182C7B6	EnsemblPlantsGene:Zm00001d047182	EnsemblPlants:Zm00001d047182_P001	EnsemblPlants:Zm00001d047182_T001
SEG:seg	:	:	:	:	:

Description

MYB-transcription factor 52Myb transcription factor MYB30%3B Putative MYB DNA-binding domain superfamily protein

Coordinates

chr9:+:121102734..121104079

Molecular Weight (calculated)

33846.8 Da

IEP (calculated)

7.467

GRAVY (calculated)

-0.357

Length

318 amino acids

Sequence
(BLAST)

001: MGRPPCCDKE SVKKGPWTPE EDLVLVSYVQ EHGPGNWRAV PANTGLLRCS KSCRLRWTNY LRPGIRRGGF SDQEDRLIVH LQALLGNRWA AIASYLPDRT
101: DNDVKNYWNT HLKKKLLAQQ QQQLRASPSP PKGQWELKLQ TDINLARRAL RDALSIDAGP PGMAVAGSAA PAPSAGPAAP QQAYALTARS VDRMMLDGWA
201: AAAPAAGRRS CVVGGTVVIP APATTPGAAE SASRSSSELT TAECSASISS ASDQRAAPVA DHQLLASEEN NYTASAVQQG EVPLSAIESW LLEDAGAGEQ
301: KLAHDGPLLD AALHSFGF

Best Arabidopsis Sequence Match ( AT1G74650.1 )
(BLAST)

001: MGRPPCCEKI EVKKGPWTPE EDIILVSYIQ QHGPGNWRSV PANTGLLRCS KSCRLRWTNY LRPGIKRGNF TQPEEKMIIH LQALLGNRWA AIASYLPQRT
101: DNDIKNYWNT HLKKKLVMMK FQNGIINENK TNLATDISSC NNNNNGCNHN KRTTNKGQWE KKLQTDINMA KQALFQALSL DQPSSLIPPD PDSPKPHHHS
201: TTTYASSTDN ISKLLQNWTS SSSSKPNTSS VSNNRSSSPG EGGLFDHHSL FSSNSESGSV DEKLNLMSET SMFKGESKPD IDMEATPTTT TTDDQGSLSL
301: IEKWLFDDQG LVQCDDSQED LIDVSLEELK

Arabidopsis Description

ATY13At1g74650 [Source:UniProtKB/TrEMBL;Acc:Q9CA52]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.