Factsheet for GSMUA_Achr9P03320_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr2P17160_001
GSMUA_Achr2P18060_001
GSMUA_Achr4P19000_001
GSMUA_Achr5P14120_001
GSMUA_Achr6P04670_001
GSMUA_Achr8P14660_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37630.1	GSMUA_Achr11P...	AT1G32230.1	19548978
AT2G37630.1	GSMUA_Achr2P18060_001	AT1G32230.1	19548978
AT2G37630.1	GSMUA_Achr4P19000_001	AT1G32230.1	19548978
AT2G37630.1	GSMUA_Achr5P14120_001	AT1G32230.1	19548978
AT2G37630.1	GSMUA_Achr8P14660_001	AT1G32230.1	19548978
AT2G37630.1	GSMUA_AchrUn_...	AT3G29390.1	16243907
AT2G37630.1	GSMUA_Achr2P17160_001	AT5G66870.1	16243907
AT2G37630.1	GSMUA_Achr6P04670_001	AT5G66870.1	16243907

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G077530.1	Barley	mitochondrion, nucleus	41.3	68.67
GSMUA_Achr7P10550_001	Banana	nucleus	64.13	57.84
GSMUA_Achr9P28330_001	Banana	nucleus	62.68	53.73
VIT_08s0007g00410.t01	Wine grape	nucleus	63.04	48.6
Bra000011.1-P	Field mustard	nucleus	59.06	46.97
CDY07778	Canola	nucleus	59.06	46.97
TraesCS5A01G079100.1	Wheat	nucleus	58.33	46.94
KRG99949	Soybean	nucleus	60.51	46.78
Solyc09g010840.1.1	Tomato	nucleus	60.87	46.67
PGSC0003DMT400022771	Potato	nucleus	60.51	46.26
KRH49100	Soybean	nucleus	60.14	45.98
CDX79747	Canola	nucleus	57.61	45.69
TraesCS5D01G093100.1	Wheat	mitochondrion, nucleus	59.06	45.15
TraesCS5B01G086900.1	Wheat	mitochondrion, nucleus	59.06	44.9
Zm00001d030737_P001	Maize	nucleus	60.14	44.86
CDX91374	Canola	nucleus	57.97	44.82
HORVU5Hr1G021230.1	Barley	mitochondrion, nucleus	58.7	44.75
AT2G37630.1	Thale cress	nucleus	59.42	44.69
KRH66092	Soybean	nucleus	57.61	44.54
Os12t0572000-01	Rice	nucleus	55.07	44.44
KRG99521	Soybean	nucleus	56.52	44.32
Bra005177.1-P	Field mustard	nucleus	57.61	44.04
CDX74943	Canola	nucleus	57.97	43.72
EES17234	Sorghum	nucleus	60.14	43.57
GSMUA_Achr9P19380_001	Banana	nucleus	42.03	37.78
GSMUA_Achr8P16920_001	Banana	nucleus	14.86	36.28
GSMUA_Achr5P29070_001	Banana	nucleus	74.64	35.03
HORVU5Hr1G112000.2	Barley	extracellular, nucleus	33.33	31.19
GSMUA_Achr6P02690_001	Banana	nucleus	20.29	22.4
GSMUA_Achr4P00480_001	Banana	nucleus	21.38	22.26
GSMUA_Achr11P...	Banana	nucleus	19.93	21.91
GSMUA_Achr7P18080_001	Banana	nucleus	21.38	21.85
GSMUA_Achr6P10700_001	Banana	nucleus	19.57	21.09
GSMUA_Achr7P21010_001	Banana	nucleus	20.29	20.82
GSMUA_Achr5P07720_001	Banana	nucleus	21.74	20.34
GSMUA_Achr8P01400_001	Banana	nucleus	18.48	19.39
GSMUA_Achr2P22010_001	Banana	nucleus	17.75	19.37
GSMUA_Achr9P17050_001	Banana	nucleus	19.57	19.35
GSMUA_Achr3P09450_001	Banana	nucleus	19.57	18.69
HORVU6Hr1G071420.2	Barley	plastid	12.32	18.48
GSMUA_Achr10P...	Banana	nucleus	21.01	18.41
GSMUA_Achr10P...	Banana	nucleus	18.84	18.18
GSMUA_Achr10P...	Banana	nucleus	18.84	18.06
GSMUA_AchrUn_...	Banana	nucleus	18.48	17.71
GSMUA_Achr7P21670_001	Banana	nucleus	18.12	17.3

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009653
GO:GO:0009987	GO:GO:0010338	EnsemblPlantsGene:GSMUA_Achr9G03320_001	EnsemblPlants:GSMUA_Achr9P03320_001	EnsemblPlants:GSMUA_Achr9T03320_001	InterPro:Homeobox-like_sf
InterPro:IPR017930	UniProt:M0TX41	InterPro:Myb_dom	PFAM:PF13921	PFscan:PS51294	PANTHER:PTHR10641
PANTHER:PTHR10641:SF457	InterPro:RS2/AS1	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI000295291D
SEG:seg	:	:	:	:	:

Description

Transcription factor AS1 [Source:GMGC_GENE;Acc:GSMUA_Achr9G03320_001]

Coordinates

chr9:-:2317111..2318281

Molecular Weight (calculated)

32269.9 Da

IEP (calculated)

10.582

GRAVY (calculated)

-0.864

Length

276 amino acids

Sequence
(BLAST)

001: MKDRQRWRSE EDAILRAYVK QYGPREWHLV SQRMNVTLDR DAKSCLERWK NYLKPGIKKG SLTEEEQRLV IRLQAKHGNK WKKIAAEIPG RTAKRLGKWW
101: EVFREKQQRE QRESNKSGAA TAEPGKYDRI LESFAEKLVK EQRAVPLLMA TPFLPPWLSN NAGSRRPPSP SRGGNGGLGL TTSQRSVHKK EAAWRLKRLE
201: LQLESEKACK RREKMEEIEA KVRALREEQQ DEPPYLPWNL KLKPITHLFV FIAFILSSEE EIPVYLFVLP RSNCSQ

Best Arabidopsis Sequence Match ( AT2G37630.1 )
(BLAST)

001: MKERQRWSGE EDALLRAYVR QFGPREWHLV SERMNKPLNR DAKSCLERWK NYLKPGIKKG SLTEEEQRLV IRLQEKHGNK WKKIAAEVPG RTAKRLGKWW
101: EVFKEKQQRE EKESNKRVEP IDESKYDRIL ESFAEKLVKE RSNVVPAAAA AATVVMANSN GGFLHSEQQV QPPNPVIPPW LATSNNGNNV VARPPSVTLT
201: LSPSTVAAAA PQPPIPWLQQ QQPERAENGP GGLVLGSMMP SCSGSSESVF LSELVECCRE LEEGHRAWAD HKKEAAWRLR RLELQLESEK TCRQREKMEE
301: IEAKMKALRE EQKNAMEKIE GEYREQLVGL RRDAEAKDQK LADQWTSRHI RLTKFLEQQM GCRLDRP

Arabidopsis Description

AS1Transcription factor AS1 [Source:UniProtKB/Swiss-Prot;Acc:O80931]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.