Factsheet for GSMUA_Achr2P17160_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr5P29070_001
GSMUA_Achr7P10550_001
GSMUA_Achr9P03320_001
GSMUA_Achr9P28330_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66870.1	GSMUA_Achr5P29070_001	AT2G37630.1	16243907
AT5G66870.1	GSMUA_Achr7P10550_001	AT2G37630.1	16243907
AT5G66870.1	GSMUA_Achr9P03320_001	AT2G37630.1	16243907
AT5G66870.1	GSMUA_Achr9P28330_001	AT2G37630.1	16243907

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P04670_001	Banana	mitochondrion	57.81	60.42
VIT_00s1247g00010.t01	Wine grape	nucleus	34.55	43.15
VIT_07s0197g00030.t01	Wine grape	nucleus	33.22	40.82
VIT_07s0197g00020.t01	Wine grape	nucleus	36.88	38.01
PGSC0003DMT400002013	Potato	nucleus	36.21	37.98
Solyc02g065150.1.1	Tomato	nucleus	36.54	37.8
GSMUA_Achr5P29470_001	Banana	mitochondrion, nucleus	17.94	37.76
KRH57745	Soybean	nucleus	34.22	37.32
GSMUA_Achr3P10050_001	Banana	cytosol, nucleus, plastid	19.27	37.18
PGSC0003DMT400002011	Potato	nucleus	35.22	36.81
GSMUA_Achr10P...	Banana	mitochondrion	19.27	36.71
GSMUA_Achr10P...	Banana	mitochondrion	19.27	36.71
KRH76950	Soybean	nucleus	36.88	36.51
VIT_07s0197g00040.t01	Wine grape	cytosol, nucleus, plastid	36.21	36.45
KRH62409	Soybean	nucleus	25.58	36.32
GSMUA_Achr8P02800_001	Banana	mitochondrion, nucleus	19.6	36.2
GSMUA_Achr9P18030_001	Banana	mitochondrion, nucleus, plastid	19.27	35.8
GSMUA_Achr6P15660_001	Banana	mitochondrion, nucleus, plastid	19.27	35.8
VIT_16s0022g02050.t01	Wine grape	cytosol, mitochondrion, nucleus	33.55	35.19
KRH28509	Soybean	nucleus	35.88	35.06
Solyc02g090410.2.1	Tomato	mitochondrion, plastid	36.54	34.92
PGSC0003DMT400025959	Potato	nucleus	35.88	34.5
KRH53127	Soybean	nucleus	23.26	34.31
Zm00001d033335_P001	Maize	plastid	31.89	34.16
EER93817	Sorghum	plastid	33.22	33.67
GSMUA_Achr2P13170_001	Banana	nucleus	19.27	33.33
Zm00001d013732_P001	Maize	plastid	32.89	33.11
AT5G66870.1	Thale cress	nucleus	33.89	32.59
GSMUA_Achr5P02190_001	Banana	mitochondrion	17.61	31.93
TraesCS4B01G079900.1	Wheat	mitochondrion, nucleus, plastid	29.9	31.69
CDY49845	Canola	nucleus, plastid	32.56	31.41
TraesCS4D01G078800.1	Wheat	mitochondrion, nucleus, plastid	29.57	31.34
GSMUA_Achr7P15500_001	Banana	nucleus	20.27	31.12
CDY52150	Canola	nucleus, plastid	32.23	30.7
TraesCS4A01G235100.1	Wheat	nucleus	29.24	30.56
GSMUA_Achr4P16790_001	Banana	plastid	19.27	30.53
GSMUA_AchrUn_...	Banana	plastid	18.6	30.43
CDY01457	Canola	nucleus, plastid	33.89	30.18
Bra012112.1-P	Field mustard	nucleus, plastid	33.89	30.18
CDY12784	Canola	nucleus, plastid	33.55	30.06
GSMUA_Achr4P32000_001	Banana	cytosol, mitochondrion, nucleus, plastid	17.94	29.67
GSMUA_Achr8P09700_001	Banana	cytosol	19.93	29.41
CDY18621	Canola	nucleus, plastid	29.57	29.37
CDX81360	Canola	plastid	32.56	29.25
GSMUA_Achr9P04330_001	Banana	plastid	17.28	29.21
GSMUA_Achr7P00880_001	Banana	cytosol, nucleus, plastid	17.94	29.03
GSMUA_Achr11P...	Banana	cytosol	20.93	29.03
HORVU4Hr1G013630.2	Barley	nucleus	28.9	28.9
GSMUA_Achr5P07460_001	Banana	nucleus	19.93	28.71
GSMUA_Achr7P22200_001	Banana	nucleus	19.93	28.44
Bra032153.1-P	Field mustard	mitochondrion, nucleus	28.9	28.25
CDX89590	Canola	mitochondrion, nucleus	28.9	28.25
CDX68120	Canola	mitochondrion, nucleus	28.9	28.25
GSMUA_Achr6P33070_001	Banana	plastid	18.27	28.06
AT2G23660.2	Thale cress	mitochondrion, nucleus	27.91	27.01
GSMUA_Achr3P17800_001	Banana	mitochondrion, plastid	20.6	26.5
GSMUA_Achr10P...	Banana	plastid	20.6	24.8
Bra037142.1-P	Field mustard	nucleus, plastid	32.23	24.62
Os03t0612400-00	Rice	cytosol, nucleus	31.56	23.93

Protein Annotations

EnsemblPlants:GSMUA_Achr2P17160_001	EnsemblPlants:GSMUA_Achr2T17160_001	EnsemblPlantsGene:GSMUA_Achr2G17160_001	InterPro:IPR004883	InterPro:LOB	PANTHER:PTHR31301
PANTHER:PTHR31301:SF22	PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI000295433F	UniProt:M0S8Q7
MapMan:15.5.24	:	:	:	:	:

Description

Putative Predicted protein [Source:GMGC_GENE;Acc:GSMUA_Achr2G17160_001]

Coordinates

chr2:-:17804775..17805680

Molecular Weight (calculated)

33821.9 Da

IEP (calculated)

6.694

GRAVY (calculated)

-0.545

Length

301 amino acids

Sequence
(BLAST)

001: MSSNAPCGAC KFLRRKCTPN CLFAPYFPTD QVTNFVYVHR MFGASKLARM LGDLNPAQRQ DAVNTLVYEA EARLREPVYG CAGYICLLQQ RLERIQNELY
101: NVEKELATYI DPAAFDPFLP PLHHQHQDQH GHHHRQGFYP SSTATYGVLG MGTIAGLGVA APGTSHYPQI LIPEQAQQQQ PQPPRIVEAQ QMAMAALAAA
201: REQDMLRSFE QQQELAKFNS EFLDSGQGYN KIDYGTMVSA MPAGSSCELP LVPAQPFELS FAVHPQHYPE QQPQQQQQWQ TQTQHQRAQS HYGRSDIGPS
301: Y

Best Arabidopsis Sequence Match ( AT5G66870.1 )
(BLAST)

001: MASSSSPCAA CKFLRRKCTQ ECVFAPYFPP DQPQKFAFVH KVFGASNVAK LLNELASNQR EDAVNSLFYE AEARLRDPVY GCVGLISILQ HRLKQVNHDL
101: ENAKKELATY VGPQAMLPIL QPHFMSLPPQ PQRPSSSSAS VLTQHHHNLL PMMAIPTGQL YHQQQQQIFE AQQLAAVARE QQNEMFRAYG GGGGSSSPHH
201: QNQAQAEILR FNNGFDSVPA GSVTVTGFNQ LSSGGTAVTG MSLGGNFVDS PSTNNNYHTD QQLHHHHQPQ QHHEAQLFIP SQSSQPLPLQ TQETQTQTQP
301: NSESEEGRRN VIG

Arabidopsis Description

LBD36LOB domain-containing protein 36 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKZ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.