Factsheet for GSMUA_Achr3P10050_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P18030_001	Banana	mitochondrion, nucleus, plastid	89.74	86.42
GSMUA_Achr6P15660_001	Banana	mitochondrion, nucleus, plastid	78.21	75.31
VIT_06s0004g07200.t01	Wine grape	mitochondrion, nucleus	76.92	73.62
KRH30173	Soybean	mitochondrion, nucleus	78.85	71.51
KRH14912	Soybean	nucleus	68.59	69.93
GSMUA_Achr10P...	Banana	mitochondrion	70.51	69.62
KRH73255	Soybean	mitochondrion, nucleus, plastid	68.59	69.48
KRG98217	Soybean	mitochondrion	76.28	69.19
GSMUA_Achr10P...	Banana	mitochondrion	69.87	68.99
VIT_13s0067g01880.t01	Wine grape	mitochondrion	73.08	66.67
KRG97685	Soybean	mitochondrion, nucleus	69.23	65.45
PGSC0003DMT400078256	Potato	mitochondrion, nucleus, plastid	72.44	65.32
Solyc06g082310.2.1	Tomato	mitochondrion, nucleus, plastid	72.44	64.94
GSMUA_Achr5P29470_001	Banana	mitochondrion, nucleus	58.97	64.34
GSMUA_Achr8P02800_001	Banana	mitochondrion, nucleus	65.38	62.58
Solyc06g050950.2.1	Tomato	mitochondrion, nucleus, plastid	68.59	62.57
PGSC0003DMT400061511	Potato	mitochondrion	67.95	61.99
TraesCS1B01G235700.1	Wheat	mitochondrion	73.08	60.32
TraesCS1A01G222300.1	Wheat	mitochondrion	73.08	60.32
TraesCS1D01G224000.1	Wheat	mitochondrion	73.08	60.32
Zm00001d038013_P001	Maize	mitochondrion	71.79	57.44
Os05t0346800-00	Rice	cytosol, nucleus	72.44	54.59
EES19343	Sorghum	mitochondrion	70.51	50.69
HORVU1Hr1G060290.2	Barley	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	73.08	48.93
GSMUA_Achr2P13170_001	Banana	nucleus	51.28	45.98
GSMUA_Achr7P00880_001	Banana	cytosol, nucleus, plastid	54.49	45.7
GSMUA_Achr5P02190_001	Banana	mitochondrion	48.08	45.18
GSMUA_Achr4P32000_001	Banana	cytosol, mitochondrion, nucleus, plastid	51.28	43.96
GSMUA_AchrUn_...	Banana	plastid	46.79	39.67
GSMUA_Achr6P33070_001	Banana	plastid	49.36	39.29
GSMUA_Achr7P15500_001	Banana	nucleus	48.08	38.27
GSMUA_Achr9P04330_001	Banana	plastid	42.31	37.08
GSMUA_Achr4P16790_001	Banana	plastid	44.23	36.32
GSMUA_Achr8P09700_001	Banana	cytosol	44.87	34.31
GSMUA_Achr5P07460_001	Banana	nucleus	45.51	33.97
GSMUA_Achr11P...	Banana	cytosol	46.79	33.64
GSMUA_Achr7P22200_001	Banana	nucleus	44.87	33.18
GSMUA_Achr10P...	Banana	plastid	48.08	30.0
GSMUA_Achr3P17800_001	Banana	mitochondrion, plastid	43.59	29.06
GSMUA_Achr6P04670_001	Banana	mitochondrion	42.95	23.26
GSMUA_Achr2P17160_001	Banana	mitochondrion	37.18	19.27

Protein Annotations

EnsemblPlants:GSMUA_Achr3P10050_001	EnsemblPlants:GSMUA_Achr3T10050_001	EnsemblPlantsGene:GSMUA_Achr3G10050_001	InterPro:IPR004883	InterPro:LOB	ncoils:Coil
PANTHER:PTHR31301	PANTHER:PTHR31301:SF57	PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI00029577A9
UniProt:M0SDC2	MapMan:15.5.24	:	:	:	:

Description

LOB domain-containing protein 12 [Source:GMGC_GENE;Acc:GSMUA_Achr3G10050_001]

Coordinates

chr3:-:7275015..7275564

Molecular Weight (calculated)

17474.9 Da

IEP (calculated)

6.235

GRAVY (calculated)

-0.336

Length

156 amino acids

Sequence
(BLAST)

001: MEGNSPCASC KLLRRRCTKD CIFAPYFPSD DPHKFSIVHR IFGASNVSKM LQELPVHQRA DAVSSLVYEA TARTKDPVYG CVGAISYLQN QVSQLQMQLA
101: VAQTEILCAQ MQQEPPMAEQ QVEAYDNNLT GMPQLMNNAS SSNLAQDQLK REFLWT

Best Arabidopsis Sequence Match ( AT2G30130.1 )
(BLAST)

001: MGGPGSSPCA SCKLLRRRCA KDCIFAPYFP PDDPHKFAIV HKVFGASNVS KMLQELPVHQ RADAVNSLVF EANARVRDPV YGCVGAISYL QNQVSQLQMQ
101: LAVAQAEILC IQMQNEPTLQ SHHQVLELDQ DHKALLLNNN NINNCNTNNN NNNFGYAMSS GQFNSNFASP SSIMQMQMQM QMQDPLKQES LWT

Arabidopsis Description

LBD12PCK1 [Source:UniProtKB/TrEMBL;Acc:A0A178VRK1]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.