Factsheet for GSMUA_Achr10P22970_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P15500_001	Banana	nucleus	64.4	82.14
GSMUA_Achr8P09700_001	Banana	cytosol	62.4	76.47
KRH10407	Soybean	mitochondrion	46.4	67.44
Solyc11g072470.1.1	Tomato	plastid	50.8	67.2
KRH24932	Soybean	nucleus, plastid	51.6	63.86
VIT_06s0004g03330.t01	Wine grape	nucleus, plastid	51.6	63.86
GSMUA_Achr6P33070_001	Banana	plastid	49.6	63.27
VIT_06s0004g03350.t01	Wine grape	plastid	51.6	63.24
KRH22937	Soybean	plastid	49.6	62.63
Solyc06g005090.2.1	Tomato	plastid	49.6	62.63
KRG89044	Soybean	nucleus, plastid	50.8	62.25
PGSC0003DMT400065346	Potato	plastid	52.0	62.2
VIT_13s0019g03700.t01	Wine grape	plastid	48.4	61.42
GSMUA_Achr4P16790_001	Banana	plastid	45.2	59.47
GSMUA_Achr9P04330_001	Banana	plastid	40.4	56.74
TraesCS1A01G062200.1	Wheat	cytosol, plastid	46.4	56.31
KRG91848	Soybean	plastid	50.0	56.31
KRH34918	Soybean	plastid	49.6	55.86
TraesCS1B01G080600.1	Wheat	cytosol, plastid	46.8	54.42
HORVU1Hr1G012720.1	Barley	cytosol, plastid	46.8	54.42
TraesCS2D01G008400.1	Wheat	plastid	46.8	54.42
EER92422	Sorghum	plastid	50.0	53.19
Zm00001d028721_P001	Maize	plastid	49.6	52.77
PGSC0003DMT400065297	Potato	plastid	45.2	52.31
GSMUA_Achr3P17800_001	Banana	mitochondrion, plastid	48.8	52.14
Zm00001d010978_P001	Maize	plastid	44.0	51.89
GSMUA_Achr5P29470_001	Banana	mitochondrion, nucleus	29.6	51.75
EES18939	Sorghum	plastid	45.2	51.6
Zm00001d035498_P001	Maize	plastid	45.6	51.58
TraesCS4B01G197100.1	Wheat	plastid	46.0	51.57
TraesCS4D01G197400.1	Wheat	plastid	46.0	51.57
HORVU4Hr1G056890.2	Barley	plastid	46.0	51.34
Zm00001d047752_P001	Maize	plastid	48.8	51.05
TraesCS4A01G107300.1	Wheat	plastid	44.8	50.22
GSMUA_Achr10P...	Banana	mitochondrion	31.6	50.0
GSMUA_Achr10P...	Banana	mitochondrion	31.6	50.0
Os03t0287400-01	Rice	plastid	47.2	49.37
GSMUA_Achr3P10050_001	Banana	cytosol, nucleus, plastid	30.0	48.08
GSMUA_Achr6P15660_001	Banana	mitochondrion, nucleus, plastid	30.8	47.53
GSMUA_Achr9P18030_001	Banana	mitochondrion, nucleus, plastid	29.2	45.06
GSMUA_Achr8P02800_001	Banana	mitochondrion, nucleus	28.4	43.56
GSMUA_Achr5P02190_001	Banana	mitochondrion	28.8	43.37
GSMUA_Achr2P13170_001	Banana	nucleus	29.2	41.95
GSMUA_Achr4P32000_001	Banana	cytosol, mitochondrion, nucleus, plastid	30.0	41.21
GSMUA_Achr7P00880_001	Banana	cytosol, nucleus, plastid	30.4	40.86
GSMUA_AchrUn_...	Banana	plastid	27.2	36.96
GSMUA_Achr5P07460_001	Banana	nucleus	28.0	33.49
GSMUA_Achr11P...	Banana	cytosol	28.4	32.72
GSMUA_Achr7P22200_001	Banana	nucleus	27.6	32.7
GSMUA_Achr6P04670_001	Banana	mitochondrion	30.0	26.04
GSMUA_Achr2P17160_001	Banana	mitochondrion	24.8	20.6

Protein Annotations

EnsemblPlants:GSMUA_Achr10P22970_001	EnsemblPlants:GSMUA_Achr10T22970_001	EnsemblPlantsGene:GSMUA_Achr10G22970_001	InterPro:IPR004883	InterPro:LOB	ncoils:Coil
PANTHER:PTHR31301	PANTHER:PTHR31301:SF6	PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI0002966868
UniProt:M0RKM2	MapMan:15.5.24	:	:	:	:

Description

LOB domain-containing protein 1 [Source:GMGC_GENE;Acc:GSMUA_Achr10G22970_001]

Coordinates

chr10:-:27905856..27906932

Molecular Weight (calculated)

26979.8 Da

IEP (calculated)

6.612

GRAVY (calculated)

-0.249

Length

250 amino acids

Sequence
(BLAST)

001: MASCSSALAL YMYSPGLEAS HHHLDSFPPP SSKAMKSSDP TTTITSSFQH SSSSSSSNSS SPTSSPISSS PPSLPPTTPP PPVIHSPCAA CKILRRRCAG
101: KCVLAPYFPP TEPLKFTTAH RVFGASNIIK LLQDLPESQR ADAVSSMVYE ANARIRDPVY GCAGAIFQLQ KQVNELQAQL AQAQAELLNL QAQHKNLIAL
201: ICVEVAQNQQ DRAPRSTDAL AAGNYLLQND AYFLDEINQE GSVWDEPLWI

Best Arabidopsis Sequence Match ( AT1G07900.1 )
(BLAST)

001: MESKSDASVA TTPIISSSSS PPPSLSPRVV LSPCAACKIL RRRCAERCVL APYFPPTDPA KFTIAHRVFG ASNIIKFLQE LPESQRTDAV NSMVYEAEAR
101: IRDPVYGCAG AIYHLQRQVS ELQAQLAKAQ VEMVNMQFQR SNLLELIYNM DQQQKQEQDN MSFESNDLGF LEDKSNTNSS MLWWDPLWTC

Arabidopsis Description

LBD1LBD1 [Source:UniProtKB/TrEMBL;Acc:A0A178WM56]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.