Factsheet for GSMUA_Achr7P15500_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P09700_001	Banana	cytosol	79.08	75.98
KRH10407	Soybean	mitochondrion	60.2	68.6
GSMUA_Achr6P33070_001	Banana	plastid	64.8	64.8
GSMUA_Achr10P...	Banana	plastid	82.14	64.4
Solyc11g072470.1.1	Tomato	plastid	60.71	62.96
KRH22937	Soybean	plastid	63.27	62.63
VIT_06s0004g03330.t01	Wine grape	nucleus, plastid	64.29	62.38
KRH24932	Soybean	nucleus, plastid	63.78	61.88
VIT_06s0004g03350.t01	Wine grape	plastid	64.29	61.76
KRG89044	Soybean	nucleus, plastid	63.27	60.78
VIT_13s0019g03700.t01	Wine grape	plastid	60.71	60.41
Solyc06g005090.2.1	Tomato	plastid	59.69	59.09
GSMUA_Achr4P16790_001	Banana	plastid	56.63	58.42
PGSC0003DMT400065346	Potato	plastid	62.24	58.37
GSMUA_Achr9P04330_001	Banana	plastid	52.55	57.87
KRG91848	Soybean	plastid	63.27	55.86
KRH34918	Soybean	plastid	62.76	55.41
GSMUA_Achr5P29470_001	Banana	mitochondrion, nucleus	38.78	53.15
TraesCS1A01G062200.1	Wheat	cytosol, plastid	55.61	52.91
GSMUA_Achr10P...	Banana	mitochondrion	41.84	51.9
GSMUA_Achr10P...	Banana	mitochondrion	41.84	51.9
PGSC0003DMT400065297	Potato	plastid	56.63	51.39
TraesCS1B01G080600.1	Wheat	cytosol, plastid	56.12	51.16
TraesCS2D01G008400.1	Wheat	plastid	56.12	51.16
HORVU1Hr1G012720.1	Barley	cytosol, plastid	56.12	51.16
EES18939	Sorghum	plastid	56.63	50.68
Zm00001d010978_P001	Maize	plastid	54.59	50.47
Zm00001d035498_P001	Maize	plastid	56.63	50.23
EER92422	Sorghum	plastid	59.69	49.79
TraesCS4D01G197400.1	Wheat	plastid	56.12	49.33
TraesCS4B01G197100.1	Wheat	plastid	56.12	49.33
HORVU4Hr1G056890.2	Barley	plastid	56.12	49.11
GSMUA_Achr6P15660_001	Banana	mitochondrion, nucleus, plastid	40.31	48.77
Zm00001d028721_P001	Maize	plastid	58.16	48.51
GSMUA_Achr3P17800_001	Banana	mitochondrion, plastid	57.65	48.29
Zm00001d047752_P001	Maize	plastid	58.67	48.12
GSMUA_Achr3P10050_001	Banana	cytosol, nucleus, plastid	38.27	48.08
TraesCS4A01G107300.1	Wheat	plastid	54.59	47.98
GSMUA_Achr9P18030_001	Banana	mitochondrion, nucleus, plastid	38.78	46.91
Os03t0287400-01	Rice	plastid	57.14	46.86
GSMUA_Achr8P02800_001	Banana	mitochondrion, nucleus	37.76	45.4
GSMUA_Achr5P02190_001	Banana	mitochondrion	37.24	43.98
GSMUA_Achr2P13170_001	Banana	nucleus	38.27	43.1
GSMUA_Achr7P00880_001	Banana	cytosol, nucleus, plastid	38.27	40.32
GSMUA_Achr4P32000_001	Banana	cytosol, mitochondrion, nucleus, plastid	37.24	40.11
GSMUA_AchrUn_...	Banana	plastid	34.69	36.96
GSMUA_Achr11P...	Banana	cytosol	36.73	33.18
GSMUA_Achr5P07460_001	Banana	nucleus	35.2	33.01
GSMUA_Achr7P22200_001	Banana	nucleus	35.2	32.7
GSMUA_Achr6P04670_001	Banana	mitochondrion	37.24	25.35
GSMUA_Achr2P17160_001	Banana	mitochondrion	31.12	20.27

Protein Annotations

EnsemblPlants:GSMUA_Achr7P15500_001	EnsemblPlants:GSMUA_Achr7T15500_001	EnsemblPlantsGene:GSMUA_Achr7G15500_001	InterPro:IPR004883	InterPro:LOB	ncoils:Coil
PANTHER:PTHR31301	PANTHER:PTHR31301:SF6	PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI000294D044
UniProt:M0THT7	MapMan:15.5.24	:	:	:	:

Description

LOB domain-containing protein 11 [Source:GMGC_GENE;Acc:GSMUA_Achr7G15500_001]

Coordinates

chr7:-:12389864..12390561

Molecular Weight (calculated)

21540.6 Da

IEP (calculated)

6.770

GRAVY (calculated)

-0.229

Length

196 amino acids

Sequence
(BLAST)

001: MDSSDTTTGF HHLSSSPTSS PVSSPPAAIH SPCAACKILR RRCADKCVLA PYFPPTEPLK FTTAHRVFGA SNIIKLLQEL PASQRADAVS SMVYEANARI
101: RDPVYGCAGA IFQLQKQVSE LQAQLARAHA ELINLQAQQK NLIAMICMEM AQTQQGYRTT PQSTNALADS PNMYQNDAYF LDEISHGSVW DEPLWI

Best Arabidopsis Sequence Match ( AT2G28500.1 )
(BLAST)

001: MLKMEINGGV ATPTASAVAK VTETTTPVNS PSPTSSPPPP PSPQQPPQPP VVLSPCAACK ILRRRCADKC VLAPYFPPTD PAKFTIAHRV FGASNIIKFL
101: QELPESQRTD AVNSMVYEAG ARMRDPVYGC AGAIYHLQRQ VSELQAQLAK TQVELVGMQL QRSSLLELIY NMEQTKLSVQ EQGQQKMSFE SSFESGDEFI
201: SSPDEESNDL GFLEDNNNNN NSSMSWWDPL WT

Arabidopsis Description

LBD11LOB domain-containing protein 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK08]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.