Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P22200_001 | Banana | nucleus | 72.81 | 74.88 |
| GSMUA_Achr5P07460_001 | Banana | nucleus | 71.43 | 74.16 |
| VIT_13s0067g02380.t01 | Wine grape | nucleus | 74.19 | 71.88 |
| GSMUA_AchrUn_... | Banana | plastid | 60.83 | 71.74 |
| KRH53776 | Soybean | nucleus | 69.59 | 68.02 |
| KRH64170 | Soybean | nucleus | 68.2 | 66.67 |
| Solyc06g050430.2.1 | Tomato | nucleus | 64.98 | 64.98 |
| HORVU1Hr1G024490.1 | Barley | cytosol, mitochondrion, nucleus | 49.31 | 64.46 |
| VIT_06s0004g07790.t01 | Wine grape | cytosol | 67.28 | 63.76 |
| PGSC0003DMT400052995 | Potato | plastid | 53.46 | 57.71 |
| Solyc06g082430.1.1 | Tomato | cytosol, nucleus, plastid | 60.83 | 56.9 |
| PGSC0003DMT400078265 | Potato | cytosol, nucleus, plastid | 58.06 | 56.76 |
| KRH17149 | Soybean | cytosol, mitochondrion, nucleus | 64.52 | 56.22 |
| TraesCS3D01G340000.1 | Wheat | cytosol | 64.06 | 56.05 |
| Zm00001d043036_P001 | Maize | cytosol | 60.83 | 55.7 |
| KRH72805 | Soybean | cytosol, mitochondrion, nucleus | 64.52 | 55.34 |
| TraesCS1D01G113100.1 | Wheat | nucleus | 59.91 | 55.32 |
| Solyc06g007390.2.1 | Tomato | nucleus | 60.37 | 55.04 |
| TraesCS3A01G346300.1 | Wheat | cytosol | 63.13 | 54.8 |
| Zm00001d009823_P001 | Maize | plastid | 55.3 | 54.79 |
| TraesCS1B01G131900.2 | Wheat | nucleus | 59.45 | 54.43 |
| OQU87769 | Sorghum | cytosol | 62.21 | 54.22 |
| TraesCS1A01G111700.1 | Wheat | nucleus | 58.99 | 54.01 |
| Os01t0825000-01 | Rice | cytosol | 61.75 | 53.39 |
| Os05t0165450-00 | Rice | extracellular | 59.91 | 52.42 |
| CDY02059 | Canola | mitochondrion | 55.76 | 51.27 |
| Bra018320.1-P | Field mustard | mitochondrion | 55.3 | 50.85 |
| CDY10726 | Canola | mitochondrion | 55.3 | 50.85 |
| GSMUA_Achr5P29470_001 | Banana | mitochondrion, nucleus | 33.18 | 50.35 |
| GSMUA_Achr10P... | Banana | mitochondrion | 36.41 | 50.0 |
| GSMUA_Achr5P02190_001 | Banana | mitochondrion | 37.79 | 49.4 |
| GSMUA_Achr10P... | Banana | mitochondrion | 35.94 | 49.37 |
| GSMUA_Achr6P15660_001 | Banana | mitochondrion, nucleus, plastid | 36.41 | 48.77 |
| GSMUA_Achr9P18030_001 | Banana | mitochondrion, nucleus, plastid | 35.94 | 48.15 |
| AT2G30340.2 | Thale cress | nucleus | 58.99 | 47.58 |
| TraesCS3B01G378100.1 | Wheat | plastid | 63.59 | 47.26 |
| GSMUA_Achr8P02800_001 | Banana | mitochondrion, nucleus | 35.48 | 47.24 |
| GSMUA_Achr3P10050_001 | Banana | cytosol, nucleus, plastid | 33.64 | 46.79 |
| PGSC0003DMT400074783 | Potato | mitochondrion | 56.22 | 44.53 |
| OQU77508 | Sorghum | cytosol, nucleus, plastid | 61.29 | 43.32 |
| GSMUA_Achr2P13170_001 | Banana | nucleus | 33.64 | 41.95 |
| GSMUA_Achr4P32000_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 35.02 | 41.76 |
| HORVU3Hr1G088440.1 | Barley | plastid | 62.21 | 40.91 |
| GSMUA_Achr7P00880_001 | Banana | cytosol, nucleus, plastid | 33.64 | 39.25 |
| GSMUA_Achr4P16790_001 | Banana | plastid | 32.26 | 36.84 |
| GSMUA_Achr7P15500_001 | Banana | nucleus | 33.18 | 36.73 |
| GSMUA_Achr6P33070_001 | Banana | plastid | 31.34 | 34.69 |
| GSMUA_Achr8P09700_001 | Banana | cytosol | 31.34 | 33.33 |
| GSMUA_Achr9P04330_001 | Banana | plastid | 27.19 | 33.15 |
| GSMUA_Achr10P... | Banana | plastid | 32.72 | 28.4 |
| GSMUA_Achr3P17800_001 | Banana | mitochondrion, plastid | 28.57 | 26.5 |
| GSMUA_Achr6P04670_001 | Banana | mitochondrion | 31.34 | 23.61 |
| GSMUA_Achr2P17160_001 | Banana | mitochondrion | 29.03 | 20.93 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr11P08330_001 | EnsemblPlants:GSMUA_Achr11T08330_001 | EnsemblPlantsGene:GSMUA_Achr11G08330_001 | InterPro:IPR004883 | InterPro:LOB | ncoils:Coil |
| PANTHER:PTHR31301 | PANTHER:PTHR31301:SF2 | PFAM:PF03195 | PFscan:PS50891 | SEG:seg | UniParc:UPI000295C745 |
| UniProt:M0RQG3 | MapMan:15.5.24 | : | : | : | : |
Description
DUF260 domain containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr11G08330_001]
Coordinates
chr11:+:6441534..6442277
Molecular Weight (calculated)
23355.0 Da
IEP (calculated)
8.718
GRAVY (calculated)
-0.191
Length
217 amino acids
Sequence
(BLAST)
(BLAST)
001: MPLHFRERME EVGKKIKREA DGITDRIGRQ VGPVGTLNTI TPCAACKLLR RRCAQDCPFS PYFSPHEPQK FALVHKVFGA SNVSKMLMEV PEPQRADAAN
101: SLVYEANLRL RDPVYGCMGA ISALQQQVQA LEAELQAVRA EILKHKYGQA GGNIIPTSHA ALLPPSAAVS VAAPPPVPLP SLSPVTDAAS SSNYTSLPSS
201: STNYSSITTN HNVAYFG
101: SLVYEANLRL RDPVYGCMGA ISALQQQVQA LEAELQAVRA EILKHKYGQA GGNIIPTSHA ALLPPSAAVS VAAPPPVPLP SLSPVTDAAS SSNYTSLPSS
201: STNYSSITTN HNVAYFG
001: MSRERERFEE IGKKIKREAD AWPHQMAGIR RPMSGPPGTL NTITPCAACK LLRRRCAQEC PFSPYFSPHE PHKFASVHKV FGASNVSKML MEVPESQRAD
101: AANSLVYEAN VRLRDPVYGC MGAISALQQQ VQALQAELTA VRSEILKYKQ REAVATLIVP SNSQVAGFHN SGGVSVIAPP PQRPTTPPQP TTAHPPSPSS
201: CVFSQPTTRD LEYGNIESEN NYFG
101: AANSLVYEAN VRLRDPVYGC MGAISALQQQ VQALQAELTA VRSEILKYKQ REAVATLIVP SNSQVAGFHN SGGVSVIAPP PQRPTTPPQP TTAHPPSPSS
201: CVFSQPTTRD LEYGNIESEN NYFG
Arabidopsis Description
LBD15LOB domain-containing protein 15 [Source:UniProtKB/Swiss-Prot;Acc:Q8L5T5]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.