Factsheet for TraesCS1D01G113100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G024490.1	Barley	cytosol, mitochondrion, nucleus	68.94	97.59
TraesCS1B01G131900.2	Wheat	nucleus	97.87	97.05
TraesCS1A01G111700.1	Wheat	nucleus	96.6	95.78
Zm00001d009823_P001	Maize	plastid	65.96	70.78
Os05t0165450-00	Rice	extracellular	70.64	66.94
GSMUA_AchrUn_...	Banana	plastid	52.34	66.85
GSMUA_Achr5P07460_001	Banana	nucleus	57.87	65.07
GSMUA_Achr11P...	Banana	cytosol	55.32	59.91
VIT_13s0067g02380.t01	Wine grape	nucleus	57.02	59.82
GSMUA_Achr7P22200_001	Banana	nucleus	53.19	59.24
OQU77508	Sorghum	cytosol, nucleus, plastid	76.17	58.31
KRH53776	Soybean	nucleus	53.62	56.76
KRH64170	Soybean	nucleus	52.77	55.86
Solyc06g050430.2.1	Tomato	nucleus	50.64	54.84
VIT_06s0004g07790.t01	Wine grape	cytosol	53.19	54.59
PGSC0003DMT400078265	Potato	cytosol, nucleus, plastid	48.51	51.35
PGSC0003DMT400052995	Potato	plastid	43.83	51.24
TraesCS3D01G340000.1	Wheat	cytosol	53.62	50.81
Solyc06g082430.1.1	Tomato	cytosol, nucleus, plastid	49.36	50.0
Solyc06g007390.2.1	Tomato	nucleus	49.79	49.16
CDY10726	Canola	mitochondrion	48.51	48.31
CDY02059	Canola	mitochondrion	48.51	48.31
Bra018320.1-P	Field mustard	mitochondrion	48.51	48.31
KRH17149	Soybean	cytosol, mitochondrion, nucleus	49.79	46.99
KRH72805	Soybean	cytosol, mitochondrion, nucleus	50.21	46.64
AT2G30340.2	Thale cress	nucleus	50.64	44.24
TraesCS1D01G224000.1	Wheat	mitochondrion	33.19	41.27
PGSC0003DMT400074783	Potato	mitochondrion	47.66	40.88
TraesCS5D01G157400.1	Wheat	plastid	30.64	40.68
TraesCS2D01G008400.1	Wheat	plastid	28.51	31.16
TraesCS4D01G197400.1	Wheat	plastid	26.81	28.25
TraesCS3D01G093500.1	Wheat	plastid	29.79	27.24
TraesCS3D01G397200.1	Wheat	plastid	29.79	27.03
TraesCS1D01G259900.1	Wheat	plastid	29.36	26.24
TraesCS4D01G014600.1	Wheat	nucleus	30.21	24.15
TraesCS4D01G078800.1	Wheat	mitochondrion, nucleus, plastid	28.94	23.94

Protein Annotations

EnsemblPlants:TraesCS1D01G113100.1	EnsemblPlantsGene:TraesCS1D01G113100	InterPro:IPR004883	InterPro:LOB	ncoils:Coil	PANTHER:PTHR31301
PANTHER:PTHR31301:SF28	PFAM:PF03195	PFscan:PS50891	SEG:seg	MapMan:15.5.24	:

Description

No Description!

Coordinates

chr1D:-:109476826..109478455

Molecular Weight (calculated)

24676.1 Da

IEP (calculated)

8.490

GRAVY (calculated)

-0.186

Length

235 amino acids

Sequence
(BLAST)

001: MSTASEWQQD HEVGKKIKSE SAAEADRMMA AARRSSSLPA AGVGPGSTPS FNTMTPCAAC KLLRRRCAQE CPFSPFFSPL EPHKFASVHK VFGASNVSKM
101: LLEVHESQRG DAANSLVYEA NLRLRDPVYG CMGAILTLQQ QVHALEAELA AVRAEILKHR YRPAAAASAV PNVPPSSHAS QLLAAGGHRP AGSLGLAAPG
201: AGPVPSASSS TTVYATASSS TDYSSITHEN VPYFG

Best Arabidopsis Sequence Match ( AT2G30340.1 )
(BLAST)

001: MSREREGFGE YYETVKKIKK DPAFETTTDH AVMGIRRHVA VPPGTTLNTV TPCAACKLLR RRCAEECPFS PYFSPHEPHK FAAVHKVFGA SNVSKMLLEV
101: GESQRGDAAN SLVYEANLRL RDPIYGCMGA ISALQHHIQS LQSELTTVRT EILRHKYQEA TTITSLQNNF NSTTTTSSVS CDQHALASAI LLPPPPPPPP
201: TPRPPRLLSS QPAPPPTPPV SLPSPSMVVS SSSSSNSSAT NSMYNPPPSS TAGYSNSLSS DNNVHYFD

Arabidopsis Description

LBD13LBD13 [Source:UniProtKB/TrEMBL;Acc:A0A178VRU4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.