Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g082430.1.1 | Tomato | cytosol, nucleus, plastid | 97.75 | 93.53 |
| PGSC0003DMT400052995 | Potato | plastid | 59.46 | 65.67 |
| VIT_06s0004g07790.t01 | Wine grape | cytosol | 64.86 | 62.88 |
| HORVU1Hr1G024490.1 | Barley | cytosol, mitochondrion, nucleus | 44.14 | 59.04 |
| GSMUA_AchrUn_... | Banana | plastid | 48.65 | 58.7 |
| GSMUA_Achr11P... | Banana | cytosol | 56.76 | 58.06 |
| KRH17149 | Soybean | cytosol, mitochondrion, nucleus | 64.86 | 57.83 |
| KRH72805 | Soybean | cytosol, mitochondrion, nucleus | 65.32 | 57.31 |
| GSMUA_Achr5P07460_001 | Banana | nucleus | 53.6 | 56.94 |
| GSMUA_Achr7P22200_001 | Banana | nucleus | 52.7 | 55.45 |
| Zm00001d009823_P001 | Maize | plastid | 50.0 | 50.68 |
| TraesCS1B01G131900.2 | Wheat | nucleus | 51.8 | 48.52 |
| TraesCS1D01G113100.1 | Wheat | nucleus | 51.35 | 48.51 |
| TraesCS1A01G111700.1 | Wheat | nucleus | 51.35 | 48.1 |
| PGSC0003DMT400054637 | Potato | cytosol, nucleus, plastid | 34.68 | 47.83 |
| Os05t0165450-00 | Rice | extracellular | 52.7 | 47.18 |
| PGSC0003DMT400022286 | Potato | cytosol, mitochondrion, nucleus, plastid | 36.04 | 46.78 |
| PGSC0003DMT400078256 | Potato | mitochondrion, nucleus, plastid | 36.04 | 46.24 |
| PGSC0003DMT400061511 | Potato | mitochondrion | 35.59 | 46.2 |
| Zm00001d043036_P001 | Maize | cytosol | 47.75 | 44.73 |
| PGSC0003DMT400061283 | Potato | mitochondrion, nucleus | 33.78 | 44.38 |
| OQU87769 | Sorghum | cytosol | 49.55 | 44.18 |
| TraesCS3D01G340000.1 | Wheat | cytosol | 49.1 | 43.95 |
| PGSC0003DMT400032875 | Potato | plastid | 30.63 | 43.31 |
| TraesCS3A01G346300.1 | Wheat | cytosol | 48.65 | 43.2 |
| PGSC0003DMT400074783 | Potato | mitochondrion | 53.15 | 43.07 |
| Os01t0825000-01 | Rice | cytosol | 48.2 | 42.63 |
| PGSC0003DMT400017805 | Potato | plastid | 30.63 | 40.48 |
| OQU77508 | Sorghum | cytosol, nucleus, plastid | 54.95 | 39.74 |
| PGSC0003DMT400010597 | Potato | cytosol, nucleus, plastid | 29.73 | 38.15 |
| PGSC0003DMT400069646 | Potato | plastid | 29.28 | 37.14 |
| PGSC0003DMT400046644 | Potato | nucleus, plastid | 31.53 | 36.65 |
| TraesCS3B01G378100.1 | Wheat | plastid | 48.2 | 36.64 |
| PGSC0003DMT400002549 | Potato | plastid | 30.18 | 35.45 |
| PGSC0003DMT400038248 | Potato | nucleus | 19.82 | 34.38 |
| PGSC0003DMT400019410 | Potato | plastid | 29.73 | 33.33 |
| HORVU3Hr1G088440.1 | Barley | plastid | 49.55 | 33.33 |
| PGSC0003DMT400065346 | Potato | plastid | 30.63 | 32.54 |
| PGSC0003DMT400065297 | Potato | plastid | 27.93 | 28.7 |
| PGSC0003DMT400002013 | Potato | nucleus | 29.73 | 23.0 |
| PGSC0003DMT400002011 | Potato | nucleus | 29.73 | 22.92 |
| PGSC0003DMT400025959 | Potato | nucleus | 30.63 | 21.73 |
| PGSC0003DMT400008972 | Potato | cytosol | 1.8 | 2.7 |
| PGSC0003DMT400041848 | Potato | nucleus | 0.9 | 2.53 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400078265 | EnsemblPlantsGene:PGSC0003DMG400030461 | EntrezGene:102601503 | InterPro:IPR004883 | InterPro:LOB | ncoils:Coil |
| PANTHER:PTHR31301 | PANTHER:PTHR31301:SF28 | PFAM:PF03195 | PFscan:PS50891 | PGSC:PGSC0003DMG400030461 | RefSeq:XP_015165722.1 |
| SEG:seg | UniParc:UPI00029634EF | UniProt:M1CZR8 | MapMan:15.5.24 | : | : |
Description
LOB domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400030461]
Coordinates
chr6:-:57561148..57563084
Molecular Weight (calculated)
23950.7 Da
IEP (calculated)
8.963
GRAVY (calculated)
-0.209
Length
222 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKKLKTEID ISQLHMQQQM GRRQVLGPVG GGTTLNNVTP CAACKLLRRR CAEECPFSPY FSPLEPHKFA AVHKVFGASN VSKLLMEVPV GQRADAANSL
101: VYEANVRLRD PVYGCMGAIS TLQQQIQNLQ VELNTIRAEI LRYKYREAAN SLIASISTSV APELPQAPPT PPPPPPPPSM VVVSSSSSSA SSTSSNLYTP
201: ASSSVANFSA ITNNNISYFD QQ
101: VYEANVRLRD PVYGCMGAIS TLQQQIQNLQ VELNTIRAEI LRYKYREAAN SLIASISTSV APELPQAPPT PPPPPPPPSM VVVSSSSSSA SSTSSNLYTP
201: ASSSVANFSA ITNNNISYFD QQ
001: MSRERERFEE IGKKIKREAD AWPHQMAGIR RPMSGPPGTL NTITPCAACK LLRRRCAQEC PFSPYFSPHE PHKFASVHKV FGASNVSKML MEVPESQRAD
101: AANSLVYEAN VRLRDPVYGC MGAISALQQQ VQALQAELTA VRSEILKYKQ REAVATLIVP SNSQVAGFHN SGGVSVIAPP PQRPTTPPQP TTAHPPSPSS
201: CVFSQPTTRD LEYGNIESEN NYFG
101: AANSLVYEAN VRLRDPVYGC MGAISALQQQ VQALQAELTA VRSEILKYKQ REAVATLIVP SNSQVAGFHN SGGVSVIAPP PQRPTTPPQP TTAHPPSPSS
201: CVFSQPTTRD LEYGNIESEN NYFG
Arabidopsis Description
LBD15LOB domain-containing protein 15 [Source:UniProtKB/Swiss-Prot;Acc:Q8L5T5]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.