Factsheet for PGSC0003DMT400017805

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g067800.2.1	Tomato	plastid	93.45	93.45
Bra039072.1-P	Field mustard	plastid	55.36	70.99
CDY20041	Canola	plastid	55.36	70.99
CDY49773	Canola	plastid	54.76	69.7
PGSC0003DMT400032875	Potato	plastid	64.88	69.43
Bra025294.1-P	Field mustard	plastid	54.17	68.94
CDX83724	Canola	plastid	54.17	68.94
CDY13730	Canola	plastid	54.17	68.94
CDY03987	Canola	plastid	52.98	67.42
Bra033019.1-P	Field mustard	plastid	52.98	67.42
KRG93235	Soybean	plastid	64.88	64.88
KRH56556	Soybean	nucleus, plastid	65.48	64.71
VIT_14s0066g00680.t01	Wine grape	nucleus, plastid	64.29	63.53
KRH07170	Soybean	plastid	64.88	60.56
KRG94119	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	64.88	59.89
AT3G27650.1	Thale cress	cytosol, nucleus, plastid	54.76	57.86
PGSC0003DMT400069646	Potato	plastid	54.76	52.57
PGSC0003DMT400046644	Potato	nucleus, plastid	58.93	51.83
PGSC0003DMT400002549	Potato	plastid	51.19	45.5
Os01t0169400-01	Rice	plastid	64.29	43.03
PGSC0003DMT400054637	Potato	cytosol, nucleus, plastid	40.48	42.24
TraesCS3A01G093200.1	Wheat	plastid	64.29	42.02
TraesCS3B01G108500.1	Wheat	plastid	64.29	42.02
TraesCS3D01G093500.1	Wheat	plastid	64.29	42.02
Zm00001d039694_P001	Maize	plastid	63.69	41.0
PGSC0003DMT400022286	Potato	cytosol, mitochondrion, nucleus, plastid	41.07	40.35
PGSC0003DMT400061283	Potato	mitochondrion, nucleus	40.48	40.24
EES00235	Sorghum	plastid	63.69	39.93
HORVU3Hr1G016690.1	Barley	plastid	64.88	39.35
PGSC0003DMT400078256	Potato	mitochondrion, nucleus, plastid	39.88	38.73
PGSC0003DMT400061511	Potato	mitochondrion	37.5	36.84
PGSC0003DMT400010597	Potato	cytosol, nucleus, plastid	37.5	36.42
PGSC0003DMT400052995	Potato	plastid	41.07	34.33
PGSC0003DMT400019410	Potato	plastid	39.29	33.33
PGSC0003DMT400065346	Potato	plastid	41.07	33.01
PGSC0003DMT400078265	Potato	cytosol, nucleus, plastid	40.48	30.63
PGSC0003DMT400038248	Potato	nucleus	23.21	30.47
PGSC0003DMT400065297	Potato	plastid	38.1	29.63
PGSC0003DMT400002013	Potato	nucleus	47.02	27.53
PGSC0003DMT400002011	Potato	nucleus	45.83	26.74
PGSC0003DMT400025959	Potato	nucleus	46.43	24.92
PGSC0003DMT400074783	Potato	mitochondrion	39.29	24.09
PGSC0003DMT400041848	Potato	nucleus	3.57	7.59
PGSC0003DMT400008972	Potato	cytosol	1.19	1.35

Protein Annotations

EnsemblPlants:PGSC0003DMT400017805	EnsemblPlantsGene:PGSC0003DMG400006914	EntrezGene:107062558	InterPro:IPR004883	InterPro:LOB	ncoils:Coil
PANTHER:PTHR31301	PANTHER:PTHR31301:SF12	PFAM:PF03195	PFscan:PS50891	PGSC:PGSC0003DMG400006914	RefSeq:XP_015168799.1
SEG:seg	UniParc:UPI000296B6B7	UniProt:M1A9H4	MapMan:15.5.24	:	:

Description

LOB domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400006914]

Coordinates

chr2:+:26516824..26519994

Molecular Weight (calculated)

18907.2 Da

IEP (calculated)

8.768

GRAVY (calculated)

-0.649

Length

168 amino acids

Sequence
(BLAST)

001: MSSTSKYSTP PCAACKFLRR KCLPSCVFAP YFPPEEPIKF TTVHKVFGAS NVSKLLNEIQ PHQREDAVNS LAYEAEARLK DPVYGCVGAI SVLQRQVIRL
101: QKELDATNAD LMRYANYEKV NNNQERNHNF QYGRRMVNSG YYNYSSAWNN GISGGHNNIG TDNCDGGR

Best Arabidopsis Sequence Match ( AT3G27650.1 )
(BLAST)

001: MPKRETKKIK PSQEVIKEGP FLVAIHLKGI YMSNYTNSPC AACKFLRRKC TSDCVFAPYF PPEEPTKFAN VHRIFGASNV SKILHEVAPH QREDAVNSLA
101: YEAEARLKDP VYGCVGAISV LQRQVLRLQR ELEETNADLM RYAGCLGGET TSAYGGRRG

Arabidopsis Description

LBD25LOB domain-containing protein 25 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8Q3]
SUBAcon: [cytosol,nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.