CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025294.1-P	Field mustard	plastid	100.0	100.0
CDX83724	Canola	plastid	96.97	96.97
CDY49773	Canola	plastid	91.67	91.67
CDY20041	Canola	plastid	90.15	90.84
CDY03987	Canola	plastid	87.88	87.88
AT3G27650.1	Thale cress	cytosol, nucleus, plastid	90.15	74.84
KRH76093	Soybean	cytosol, endoplasmic reticulum, nucleus	56.06	68.52
Solyc02g086480.1.1	Tomato	plastid	67.42	59.73
KRG93235	Soybean	plastid	74.24	58.33
PGSC0003DMT400032875	Potato	plastid	68.94	57.96
KRH56556	Soybean	nucleus, plastid	74.24	57.65
Solyc02g067800.2.1	Tomato	plastid	69.7	54.76
PGSC0003DMT400017805	Potato	plastid	68.94	54.17
VIT_14s0066g00680.t01	Wine grape	nucleus, plastid	69.7	54.12
KRH07170	Soybean	plastid	72.73	53.33
KRG94119	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	72.73	52.75
CDY16738	Canola	plastid	68.18	51.14
CDY48125	Canola	plastid	68.18	51.14
CDY51008	Canola	mitochondrion	53.03	50.36
CDY69697	Canola	plastid	68.18	49.72
CDY68853	Canola	plastid	68.18	49.72
CDY72536	Canola	mitochondrion	51.52	49.28
CDY40054	Canola	mitochondrion	53.03	42.94
CDY66794	Canola	mitochondrion	52.27	42.33
CDY50999	Canola	cytosol, mitochondrion, plastid	52.27	42.07
CDX77553	Canola	cytosol, mitochondrion, nucleus, plastid	54.55	41.86
CDX81767	Canola	cytosol, nucleus, plastid	51.52	41.46
CDY50718	Canola	cytosol, mitochondrion, nucleus, plastid	53.79	41.28
CDY16414	Canola	nucleus, plastid	61.36	40.1
CDY46781	Canola	nucleus, plastid	61.36	40.1
CDY10714	Canola	mitochondrion	53.79	37.57
CDY24027	Canola	mitochondrion	52.27	36.7
CDY06285	Canola	nucleus, plastid	51.52	35.79
CDY67958	Canola	plastid	53.03	35.35
CDY23903	Canola	plastid	53.03	35.35
CDY22713	Canola	plastid	50.76	35.08
Os01t0169400-01	Rice	plastid	66.67	35.06
TraesCS3D01G093500.1	Wheat	plastid	65.15	33.46
TraesCS3B01G108500.1	Wheat	plastid	65.15	33.46
TraesCS3A01G093200.1	Wheat	plastid	65.15	33.46
Zm00001d039694_P001	Maize	plastid	65.15	32.95
CDY06988	Canola	plastid	50.0	32.84
EES00235	Sorghum	plastid	65.15	32.09
CDX93178	Canola	cytosol, nucleus, plastid	54.55	31.72
HORVU3Hr1G016690.1	Barley	plastid	65.15	31.05
CDY04570	Canola	plastid	50.0	30.28
CDY31207	Canola	plastid	49.24	30.09
CDY62454	Canola	plastid	49.24	29.95
CDX77182	Canola	plastid	49.24	29.95
CDY15755	Canola	plastid	49.24	29.95
CDX93609	Canola	nucleus	50.76	29.78
CDY07604	Canola	mitochondrion	52.27	29.74
CDY24903	Canola	mitochondrion	51.52	29.44
CDX95115	Canola	plastid	50.76	29.39
CDY10726	Canola	mitochondrion	50.76	28.39
CDY02059	Canola	mitochondrion	50.76	28.39
CDX83290	Canola	plastid	48.48	27.71
CDY49845	Canola	nucleus, plastid	59.09	25.0
CDY52150	Canola	nucleus, plastid	58.33	24.37
CDY12784	Canola	nucleus, plastid	58.33	22.92
CDY01457	Canola	nucleus, plastid	58.33	22.78
CDX89590	Canola	mitochondrion, nucleus	51.52	22.08
CDX68120	Canola	mitochondrion, nucleus	51.52	22.08
CDY18621	Canola	nucleus, plastid	48.48	21.12
CDX81360	Canola	plastid	50.76	20.0

Protein Annotations

EnsemblPlants:CDY13730	EnsemblPlantsGene:GSBRNA2T00078158001	InterPro:IPR004883	InterPro:LOB	ncoils:Coil	PANTHER:PTHR31301
PANTHER:PTHR31301:SF12	PFAM:PF03195	PFscan:PS50891	ProteinID:CDY13730	ProteinID:CDY13730.1	SEG:seg
UniParc:UPI000253FC3E	UniProt:A0A078FH29	MapMan:15.5.24	:	:	:

Description

BnaA06g31930DBnaA06g31930D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FH29]

Coordinates

chrLK032037:+:815162..817470

Molecular Weight (calculated)

14564.2 Da

IEP (calculated)

7.769

GRAVY (calculated)

-0.314

Length

132 amino acids

Sequence
(BLAST)

001: MSSSYSSYTN SPCAACKFLR RKCTSDCVFA PYFPPEEPTK FANVHRIFGA SNVSKILQEV APHQREDAVN SLAYEAEARL RDPVYGCVGA ISVLQRQVLG
101: LQRELEETNA DIMRYASCLG GETSSVYGAR RG

Best Arabidopsis Sequence Match ( AT3G27650.1 )
(BLAST)

001: MPKRETKKIK PSQEVIKEGP FLVAIHLKGI YMSNYTNSPC AACKFLRRKC TSDCVFAPYF PPEEPTKFAN VHRIFGASNV SKILHEVAPH QREDAVNSLA
101: YEAEARLKDP VYGCVGAISV LQRQVLRLQR ELEETNADLM RYAGCLGGET TSAYGGRRG

Arabidopsis Description

LBD25LOB domain-containing protein 25 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8Q3]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.