CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 5
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72536	Canola	mitochondrion	92.09	92.75
VIT_06s0004g07200.t01	Wine grape	mitochondrion, nucleus	85.61	73.01
Bra018335.1-P	Field mustard	mitochondrion	98.56	72.49
CDY10714	Canola	mitochondrion	98.56	72.49
AT2G30130.1	Thale cress	mitochondrion, nucleus	97.12	69.95
KRH73255	Soybean	mitochondrion, nucleus, plastid	76.26	68.83
PGSC0003DMT400078256	Potato	mitochondrion, nucleus, plastid	85.61	68.79
KRH14912	Soybean	nucleus	75.54	68.63
GSMUA_Achr5P29470_001	Banana	mitochondrion, nucleus	70.5	68.53
Solyc06g082310.2.1	Tomato	mitochondrion, nucleus, plastid	85.61	68.39
CDY24027	Canola	mitochondrion	92.09	68.09
KRH30173	Soybean	mitochondrion, nucleus	82.01	66.28
KRG98217	Soybean	mitochondrion	81.3	65.7
VIT_13s0067g01880.t01	Wine grape	mitochondrion	79.14	64.33
KRG97685	Soybean	mitochondrion, nucleus	72.66	61.21
Solyc06g050950.2.1	Tomato	mitochondrion, nucleus, plastid	74.82	60.82
PGSC0003DMT400061511	Potato	mitochondrion	74.82	60.82
TraesCS1D01G224000.1	Wheat	mitochondrion	78.42	57.67
TraesCS1A01G222300.1	Wheat	mitochondrion	78.42	57.67
TraesCS1B01G235700.1	Wheat	mitochondrion	78.42	57.67
Zm00001d038013_P001	Maize	mitochondrion	76.26	54.36
CDY13730	Canola	plastid	50.36	53.03
CDX83724	Canola	plastid	50.36	53.03
Os05t0346800-00	Rice	cytosol, nucleus	77.7	52.17
CDY03987	Canola	plastid	48.92	51.52
CDX81767	Canola	cytosol, nucleus, plastid	60.43	51.22
CDX77553	Canola	cytosol, mitochondrion, nucleus, plastid	62.59	50.58
CDY40054	Canola	mitochondrion	58.99	50.31
EES19343	Sorghum	mitochondrion	78.42	50.23
CDY49773	Canola	plastid	47.48	50.0
CDY50718	Canola	cytosol, mitochondrion, nucleus, plastid	61.87	50.0
CDY50999	Canola	cytosol, mitochondrion, plastid	58.99	50.0
CDY66794	Canola	mitochondrion	58.27	49.69
CDY20041	Canola	plastid	46.76	49.62
HORVU1Hr1G060290.2	Barley	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	78.42	46.78
CDY48125	Canola	plastid	53.96	42.61
CDY16738	Canola	plastid	53.96	42.61
CDY69697	Canola	plastid	55.4	42.54
CDY68853	Canola	plastid	54.68	41.99
CDY22713	Canola	plastid	53.96	39.27
CDY06285	Canola	nucleus, plastid	53.24	38.95
CDY23903	Canola	plastid	54.68	38.38
CDY67958	Canola	plastid	54.68	38.38
CDY06988	Canola	plastid	53.96	37.31
CDY04570	Canola	plastid	56.12	35.78
CDY62454	Canola	plastid	55.4	35.48
CDY15755	Canola	plastid	55.4	35.48
CDX77182	Canola	plastid	55.4	35.48
CDX93609	Canola	nucleus	56.12	34.67
CDY31207	Canola	plastid	53.24	34.26
CDX95115	Canola	plastid	56.12	34.21
CDY46781	Canola	nucleus, plastid	49.64	34.16
CDY16414	Canola	nucleus, plastid	49.64	34.16
CDX93178	Canola	cytosol, nucleus, plastid	55.4	33.92
CDY24903	Canola	mitochondrion	56.12	33.77
CDX83290	Canola	plastid	55.4	33.33
CDY07604	Canola	mitochondrion	55.4	33.19
CDY10726	Canola	mitochondrion	51.8	30.51
CDY02059	Canola	mitochondrion	51.8	30.51
CDY52150	Canola	nucleus, plastid	51.8	22.78
CDY49845	Canola	nucleus, plastid	51.08	22.76
CDX68120	Canola	mitochondrion, nucleus	48.92	22.08
CDX89590	Canola	mitochondrion, nucleus	48.92	22.08
CDY12784	Canola	nucleus, plastid	51.08	21.13
CDY01457	Canola	nucleus, plastid	51.08	21.01
CDY18621	Canola	nucleus, plastid	44.6	20.46
CDX81360	Canola	plastid	48.2	20.0

Protein Annotations

EnsemblPlants:CDY51008	EnsemblPlantsGene:GSBRNA2T00097993001	InterPro:IPR004883	InterPro:LOB	ncoils:Coil	PANTHER:PTHR31301
PANTHER:PTHR31301:SF57	PFAM:PF03195	PFscan:PS50891	ProteinID:CDY51008	ProteinID:CDY51008.1	SEG:seg
UniParc:UPI0004EE64FF	UniProt:A0A078IPM1	MapMan:15.5.24	:	:	:

Description

BnaC04g54590DBnaC04g54590D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IPM1]

Coordinates

chrLK032956:-:49946..50722

Molecular Weight (calculated)

15578.1 Da

IEP (calculated)

7.814

GRAVY (calculated)

-0.162

Length

139 amino acids

Sequence
(BLAST)

001: MGGPGSSPCA SCKLLRRRCA KDCIFAPYFP PDDPHKFAIV HKVFGASNVS KMLQELPVHQ RADAVNSLVF EANARVRDPV YGCVGAISYL QNQVSQLQMQ
101: LAVAQAEILC IQMQQEPNLH MMQMQMQMQD PLKQESLWT

Best Arabidopsis Sequence Match ( AT2G30130.1 )
(BLAST)

001: MGGPGSSPCA SCKLLRRRCA KDCIFAPYFP PDDPHKFAIV HKVFGASNVS KMLQELPVHQ RADAVNSLVF EANARVRDPV YGCVGAISYL QNQVSQLQMQ
101: LAVAQAEILC IQMQNEPTLQ SHHQVLELDQ DHKALLLNNN NINNCNTNNN NNNFGYAMSS GQFNSNFASP SSIMQMQMQM QMQDPLKQES LWT

Arabidopsis Description

LBD12PCK1 [Source:UniProtKB/TrEMBL;Acc:A0A178VRK1]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.