Subcellular Localization
min:
: max
Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, mitochondrion, plastid, plasma membrane, golgi
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G222300.1 | Wheat | mitochondrion | 80.69 | 99.47 |
| TraesCS1D01G224000.1 | Wheat | mitochondrion | 80.26 | 98.94 |
| TraesCS1B01G235700.1 | Wheat | mitochondrion | 80.26 | 98.94 |
| CDY51008 | Canola | mitochondrion | 46.78 | 78.42 |
| CDY72536 | Canola | mitochondrion | 45.49 | 76.81 |
| VIT_06s0004g07200.t01 | Wine grape | mitochondrion, nucleus | 51.93 | 74.23 |
| GSMUA_Achr3P10050_001 | Banana | cytosol, nucleus, plastid | 48.93 | 73.08 |
| GSMUA_Achr9P18030_001 | Banana | mitochondrion, nucleus, plastid | 50.64 | 72.84 |
| Zm00001d038013_P001 | Maize | mitochondrion | 60.94 | 72.82 |
| GSMUA_Achr6P15660_001 | Banana | mitochondrion, nucleus, plastid | 49.79 | 71.6 |
| GSMUA_Achr10P... | Banana | mitochondrion | 48.07 | 70.89 |
| Os05t0346800-00 | Rice | cytosol, nucleus | 62.66 | 70.53 |
| GSMUA_Achr10P... | Banana | mitochondrion | 47.64 | 70.25 |
| Solyc06g082310.2.1 | Tomato | mitochondrion, nucleus, plastid | 50.21 | 67.24 |
| PGSC0003DMT400078256 | Potato | mitochondrion, nucleus, plastid | 49.79 | 67.05 |
| KRH30173 | Soybean | mitochondrion, nucleus | 48.93 | 66.28 |
| KRG98217 | Soybean | mitochondrion | 48.5 | 65.7 |
| VIT_13s0067g01880.t01 | Wine grape | mitochondrion | 48.07 | 65.5 |
| EES19343 | Sorghum | mitochondrion | 60.94 | 65.44 |
| Bra021612.1-P | Field mustard | nucleus | 50.64 | 62.11 |
| Bra018335.1-P | Field mustard | mitochondrion | 50.21 | 61.9 |
| CDY10714 | Canola | mitochondrion | 50.21 | 61.9 |
| PGSC0003DMT400061511 | Potato | mitochondrion | 45.06 | 61.4 |
| Solyc06g050950.2.1 | Tomato | mitochondrion, nucleus, plastid | 45.06 | 61.4 |
| AT2G30130.1 | Thale cress | mitochondrion, nucleus | 50.64 | 61.14 |
| Bra022780.1-P | Field mustard | mitochondrion, nucleus | 48.93 | 60.64 |
| CDY24027 | Canola | mitochondrion | 48.93 | 60.64 |
| HORVU5Hr1G047610.1 | Barley | plastid | 44.21 | 58.19 |
| HORVU4Hr1G002480.2 | Barley | cytosol | 35.19 | 46.07 |
| HORVU1Hr1G024490.1 | Barley | cytosol, mitochondrion, nucleus | 31.33 | 43.98 |
| HORVU1Hr1G012720.1 | Barley | cytosol, plastid | 32.19 | 34.88 |
| HORVU4Hr1G056890.2 | Barley | plastid | 30.9 | 32.14 |
| HORVU3Hr1G016690.1 | Barley | plastid | 33.48 | 28.16 |
| HORVU1Hr1G064640.3 | Barley | plastid | 32.62 | 27.34 |
| HORVU3Hr1G090240.2 | Barley | plastid | 30.04 | 25.93 |
| HORVU3Hr1G090250.5 | Barley | plastid | 30.04 | 25.93 |
| HORVU4Hr1G013630.2 | Barley | nucleus | 33.05 | 25.58 |
| HORVU3Hr1G088440.1 | Barley | plastid | 33.91 | 23.94 |
Protein Annotations
| EnsemblPlants:HORVU1Hr1G060290.2 | EnsemblPlantsGene:HORVU1Hr1G060290 | InterPro:IPR004883 | InterPro:LOB | ncoils:Coil | PANTHER:PTHR31301 |
| PANTHER:PTHR31301:SF60 | PFAM:PF03195 | PFscan:PS50891 | SEG:seg | SignalP:SignalP-noTM | UniParc:UPI000B47CD50 |
| UniProt:A0A287FUJ4 | MapMan:15.5.24 | : | : | : | : |
Description
No Description!
Coordinates
chrchr1H:+:438748890..438750009
Molecular Weight (calculated)
24828.6 Da
IEP (calculated)
7.122
GRAVY (calculated)
-0.087
Length
233 amino acids
Sequence
(BLAST)
(BLAST)
001: LASLALSLKL AASSALAPNG YYARDIRPAA GGADTLQAHT TVACMAGGSP CASCKLLRRR CTKDCIFAPF FPADDPHKFA IVHKVFGASN VSKMLLELPV
101: QQRGDAVSSL VYEANARVRD PVYGCVGAIS FLQNQVSQLQ MQLAVAQAEI LCIQMQQRDG CQSQDDAGRN DGHSLAAMQQ MVVDDTAAAE AFLMQNGGGG
201: FPPQLMSSYG GAPASNVHHY GQQDHLKRES LWT
101: QQRGDAVSSL VYEANARVRD PVYGCVGAIS FLQNQVSQLQ MQLAVAQAEI LCIQMQQRDG CQSQDDAGRN DGHSLAAMQQ MVVDDTAAAE AFLMQNGGGG
201: FPPQLMSSYG GAPASNVHHY GQQDHLKRES LWT
001: MGGPGSSPCA SCKLLRRRCA KDCIFAPYFP PDDPHKFAIV HKVFGASNVS KMLQELPVHQ RADAVNSLVF EANARVRDPV YGCVGAISYL QNQVSQLQMQ
101: LAVAQAEILC IQMQNEPTLQ SHHQVLELDQ DHKALLLNNN NINNCNTNNN NNNFGYAMSS GQFNSNFASP SSIMQMQMQM QMQDPLKQES LWT
101: LAVAQAEILC IQMQNEPTLQ SHHQVLELDQ DHKALLLNNN NINNCNTNNN NNNFGYAMSS GQFNSNFASP SSIMQMQMQM QMQDPLKQES LWT
Arabidopsis Description
LBD12PCK1 [Source:UniProtKB/TrEMBL;Acc:A0A178VRK1]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.