Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- nucleus 3
- cytosol 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G157400.1 | Wheat | plastid | 97.74 | 97.74 |
| TraesCS5B01G150800.1 | Wheat | plastid | 97.74 | 97.74 |
| TraesCS5A01G152200.1 | Wheat | plastid | 97.74 | 97.74 |
| Os12t0106200-01 | Rice | mitochondrion | 56.5 | 64.1 |
| Os11t0106900-01 | Rice | mitochondrion | 56.5 | 64.1 |
| KXG22772 | Sorghum | plastid | 61.02 | 51.92 |
| EES07852 | Sorghum | plastid | 62.15 | 51.64 |
| HORVU4Hr1G002480.2 | Barley | cytosol | 45.76 | 45.51 |
| HORVU1Hr1G060290.2 | Barley | endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 58.19 | 44.21 |
| HORVU1Hr1G024490.1 | Barley | cytosol, mitochondrion, nucleus | 38.42 | 40.96 |
| HORVU1Hr1G012720.1 | Barley | cytosol, plastid | 46.33 | 38.14 |
| HORVU4Hr1G056890.2 | Barley | plastid | 42.94 | 33.93 |
| HORVU3Hr1G016690.1 | Barley | plastid | 41.24 | 26.35 |
| HORVU3Hr1G090250.5 | Barley | plastid | 38.98 | 25.56 |
| HORVU3Hr1G090240.2 | Barley | plastid | 38.98 | 25.56 |
| HORVU1Hr1G064640.3 | Barley | plastid | 40.11 | 25.54 |
| HORVU4Hr1G013630.2 | Barley | nucleus | 39.55 | 23.26 |
| HORVU3Hr1G088440.1 | Barley | plastid | 42.94 | 23.03 |
Protein Annotations
| EnsemblPlants:HORVU5Hr1G047610.1 | EnsemblPlantsGene:HORVU5Hr1G047610 | InterPro:IPR004883 | InterPro:LOB | ncoils:Coil | PANTHER:PTHR31301 |
| PANTHER:PTHR31301:SF15 | PFAM:PF03195 | PFscan:PS50891 | SEG:seg | UniParc:UPI00029573E7 | UniProt:M0WH93 |
| MapMan:15.5.24 | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr5H:+:370133789..370134854
Molecular Weight (calculated)
19675.5 Da
IEP (calculated)
7.371
GRAVY (calculated)
-0.308
Length
177 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGAQTGSSA TPCASCKLLR RRCARDCVFA PYFPPEDPHR FATVHRVFGA SNVSKMLQEL PAAQRADAVS SLVYEATARM RDPVYGCAGA ISYLQQQVSQ
101: LQVQLAVAQA EIIQRINHPS PSAAFHLQEL QQRQAQQQQQ MQMDDDDKAY SSLVMQNDLM STLLLQEACL KKESLWT
101: LQVQLAVAQA EIIQRINHPS PSAAFHLQEL QQRQAQQQQQ MQMDDDDKAY SSLVMQNDLM STLLLQEACL KKESLWT
001: MGGPGSSPCA SCKLLRRRCA KDCIFAPYFP PDDPHKFAIV HKVFGASNVS KMLQELPVHQ RADAVNSLVF EANARVRDPV YGCVGAISYL QNQVSQLQMQ
101: LAVAQAEILC IQMQNEPTLQ SHHQVLELDQ DHKALLLNNN NINNCNTNNN NNNFGYAMSS GQFNSNFASP SSIMQMQMQM QMQDPLKQES LWT
101: LAVAQAEILC IQMQNEPTLQ SHHQVLELDQ DHKALLLNNN NINNCNTNNN NNNFGYAMSS GQFNSNFASP SSIMQMQMQM QMQDPLKQES LWT
Arabidopsis Description
LBD12PCK1 [Source:UniProtKB/TrEMBL;Acc:A0A178VRK1]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.