Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG22772 | Sorghum | plastid | 88.26 | 90.38 |
| Os12t0106200-01 | Rice | mitochondrion | 49.3 | 67.31 |
| Os11t0106900-01 | Rice | mitochondrion | 49.3 | 67.31 |
| TraesCS5D01G157400.1 | Wheat | plastid | 52.58 | 63.28 |
| TraesCS5B01G150800.1 | Wheat | plastid | 52.58 | 63.28 |
| TraesCS5A01G152200.1 | Wheat | plastid | 52.11 | 62.71 |
| HORVU5Hr1G047610.1 | Barley | plastid | 51.64 | 62.15 |
| EES19343 | Sorghum | mitochondrion | 52.58 | 51.61 |
| EER93717 | Sorghum | plastid | 44.13 | 45.41 |
| EES18939 | Sorghum | plastid | 36.15 | 35.16 |
| OQU87769 | Sorghum | cytosol | 37.09 | 31.73 |
| EES00235 | Sorghum | plastid | 39.91 | 31.72 |
| EER92422 | Sorghum | plastid | 34.27 | 31.06 |
| EER93817 | Sorghum | plastid | 35.68 | 25.59 |
| OQU77508 | Sorghum | cytosol, nucleus, plastid | 36.62 | 25.41 |
| OQU78015 | Sorghum | plastid | 33.8 | 23.38 |
| OQU88012 | Sorghum | mitochondrion, vacuole | 33.33 | 21.39 |
Protein Annotations
| EnsemblPlants:EES07852 | EnsemblPlantsGene:SORBI_3005G004700 | InterPro:IPR004883 | InterPro:LOB | ncoils:Coil | PANTHER:PTHR31301 |
| PANTHER:PTHR31301:SF15 | PFAM:PF03195 | PFscan:PS50891 | ProteinID:EES07852 | ProteinID:EES07852.2 | SEG:seg |
| UniParc:UPI0003C72E6B | UniProt:C5Y2Z9 | MapMan:15.5.24 | : | : | : |
Description
hypothetical protein
Coordinates
chr5:+:372277..373283
Molecular Weight (calculated)
23016.4 Da
IEP (calculated)
6.980
GRAVY (calculated)
-0.289
Length
213 amino acids
Sequence
(BLAST)
(BLAST)
001: MADSGNGSRS SSSSSSSPPC ASCKLLRRRC TQECVFAPYF PPEDPHKFAI VHKVFGASNV SKMLQELPAQ QRADAVSSLV YEANARMRDP VYGCVGAISY
101: LQQQVSQLQV QLALAKAEIL CVQMHHDYES ASAAAAAAPA PAKQQQLQQQ QQEEMECEAY GNLLVQNGLM MNTLNGTGAV HQQQKQMLGG FGSAGNTAMM
201: LQEACLKKES LWA
101: LQQQVSQLQV QLALAKAEIL CVQMHHDYES ASAAAAAAPA PAKQQQLQQQ QQEEMECEAY GNLLVQNGLM MNTLNGTGAV HQQQKQMLGG FGSAGNTAMM
201: LQEACLKKES LWA
001: MGGPGSSPCA SCKLLRRRCA KDCIFAPYFP PDDPHKFAIV HKVFGASNVS KMLQELPVHQ RADAVNSLVF EANARVRDPV YGCVGAISYL QNQVSQLQMQ
101: LAVAQAEILC IQMQNEPTLQ SHHQVLELDQ DHKALLLNNN NINNCNTNNN NNNFGYAMSS GQFNSNFASP SSIMQMQMQM QMQDPLKQES LWT
101: LAVAQAEILC IQMQNEPTLQ SHHQVLELDQ DHKALLLNNN NINNCNTNNN NNNFGYAMSS GQFNSNFASP SSIMQMQMQM QMQDPLKQES LWT
Arabidopsis Description
LBD12PCK1 [Source:UniProtKB/TrEMBL;Acc:A0A178VRK1]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.