CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES07852	Sorghum	plastid	90.38	88.26
Os12t0106200-01	Rice	mitochondrion	51.44	68.59
Os11t0106900-01	Rice	mitochondrion	51.44	68.59
TraesCS5D01G157400.1	Wheat	plastid	52.88	62.15
TraesCS5B01G150800.1	Wheat	plastid	52.88	62.15
TraesCS5A01G152200.1	Wheat	plastid	52.4	61.58
HORVU5Hr1G047610.1	Barley	plastid	51.92	61.02
EES19343	Sorghum	mitochondrion	52.4	50.23
EER93717	Sorghum	plastid	44.23	44.44
EES18939	Sorghum	plastid	35.58	33.79
OQU87769	Sorghum	cytosol	37.5	31.33
EES00235	Sorghum	plastid	39.42	30.6
EER92422	Sorghum	plastid	33.65	29.79
OQU77508	Sorghum	cytosol, nucleus, plastid	37.5	25.41
EER93817	Sorghum	plastid	35.1	24.58
OQU78015	Sorghum	plastid	34.62	23.38
OQU88012	Sorghum	mitochondrion, vacuole	34.13	21.39

Protein Annotations

EnsemblPlants:KXG22772	EnsemblPlantsGene:SORBI_3008G005000	InterPro:IPR004883	InterPro:LOB	ncoils:Coil	PANTHER:PTHR31301
PANTHER:PTHR31301:SF15	PFAM:PF03195	PFscan:PS50891	ProteinID:KXG22772	ProteinID:KXG22772.1	SEG:seg
UniParc:UPI00081AB6D8	UniProt:A0A1B6PAP6	MapMan:15.5.24	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:458718..459464

Molecular Weight (calculated)

22311.5 Da

IEP (calculated)

7.260

GRAVY (calculated)

-0.236

Length

208 amino acids

Sequence
(BLAST)

001: MAGSGSGSGS GSSSSSSSSS PPCASCKLLR RRCTQECVFA PYFPPEDPHK FAIVHKVFGA SNVSKMLQQR ADAVSSLVYE ANARMRDPVY GCVGAISYLQ
101: QQVSQLQVQL ALAKAEILCV QMQHDESASA AAAPAPAKQQ LHHHHHQQEE MECEAYGSLL VQNGLMMNTL NSTGAVHHQQ QMLGSFGSAG NTAMMLQEAC
201: LKKETLWA

Best Arabidopsis Sequence Match ( AT2G30130.1 )
(BLAST)

001: MGGPGSSPCA SCKLLRRRCA KDCIFAPYFP PDDPHKFAIV HKVFGASNVS KMLQELPVHQ RADAVNSLVF EANARVRDPV YGCVGAISYL QNQVSQLQMQ
101: LAVAQAEILC IQMQNEPTLQ SHHQVLELDQ DHKALLLNNN NINNCNTNNN NNNFGYAMSS GQFNSNFASP SSIMQMQMQM QMQDPLKQES LWT

Arabidopsis Description

LBD12PCK1 [Source:UniProtKB/TrEMBL;Acc:A0A178VRK1]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.