CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038013_P001	Maize	mitochondrion	79.72	88.72
CDY51008	Canola	mitochondrion	50.23	78.42
CDY72536	Canola	mitochondrion	48.85	76.81
TraesCS1A01G222300.1	Wheat	mitochondrion	65.44	75.13
TraesCS1D01G224000.1	Wheat	mitochondrion	65.44	75.13
TraesCS1B01G235700.1	Wheat	mitochondrion	65.44	75.13
GSMUA_Achr9P18030_001	Banana	mitochondrion, nucleus, plastid	54.84	73.46
GSMUA_Achr6P15660_001	Banana	mitochondrion, nucleus, plastid	53.92	72.22
GSMUA_Achr10P...	Banana	mitochondrion	52.07	71.52
VIT_06s0004g07200.t01	Wine grape	mitochondrion, nucleus	53.46	71.17
GSMUA_Achr10P...	Banana	mitochondrion	51.61	70.89
Os05t0346800-00	Rice	cytosol, nucleus	67.28	70.53
GSMUA_Achr3P10050_001	Banana	cytosol, nucleus, plastid	50.69	70.51
Solyc06g082310.2.1	Tomato	mitochondrion, nucleus, plastid	54.84	68.39
PGSC0003DMT400078256	Potato	mitochondrion, nucleus, plastid	54.38	68.21
KRH30173	Soybean	mitochondrion, nucleus	52.07	65.7
VIT_13s0067g01880.t01	Wine grape	mitochondrion	51.61	65.5
KRG98217	Soybean	mitochondrion	51.61	65.12
HORVU1Hr1G060290.2	Barley	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	65.44	60.94
Bra018335.1-P	Field mustard	mitochondrion	53.0	60.85
CDY10714	Canola	mitochondrion	53.0	60.85
PGSC0003DMT400061511	Potato	mitochondrion	47.93	60.82
Solyc06g050950.2.1	Tomato	mitochondrion, nucleus, plastid	47.93	60.82
Bra021612.1-P	Field mustard	nucleus	53.0	60.53
AT2G30130.1	Thale cress	mitochondrion, nucleus	53.0	59.59
CDY24027	Canola	mitochondrion	51.15	59.04
Bra022780.1-P	Field mustard	mitochondrion, nucleus	51.15	59.04
EES07852	Sorghum	plastid	51.61	52.58
KXG22772	Sorghum	plastid	50.23	52.4
EER93717	Sorghum	plastid	41.01	43.0
EES18939	Sorghum	plastid	34.1	33.79
EER92422	Sorghum	plastid	33.64	31.06
OQU87769	Sorghum	cytosol	33.18	28.92
EES00235	Sorghum	plastid	32.72	26.49
EER93817	Sorghum	plastid	35.02	25.59
OQU77508	Sorghum	cytosol, nucleus, plastid	33.18	23.45
OQU78015	Sorghum	plastid	32.26	22.73
OQU88012	Sorghum	mitochondrion, vacuole	32.72	21.39

Protein Annotations

EnsemblPlants:EES19343	EnsemblPlantsGene:SORBI_3009G102400	EntrezGene:8083739	InterPro:IPR004883	InterPro:LOB	ncoils:Coil
PANTHER:PTHR31301	PANTHER:PTHR31301:SF60	PFAM:PF03195	PFscan:PS50891	ProteinID:EES19343	ProteinID:EES19343.1
RefSeq:XP_002440913.1	SEG:seg	UniParc:UPI0001A88AA9	UniProt:C5YWA0	MapMan:15.5.24	:

Description

hypothetical protein

Coordinates

chr9:-:40812786..40814260

Molecular Weight (calculated)

22789.5 Da

IEP (calculated)

6.497

GRAVY (calculated)

-0.025

Length

217 amino acids

Sequence
(BLAST)

001: MGGGSPCASC KLLRRRCTKD CIFAPFFPAD DPHKFAIVHK VFGASNVSKM LQELPVQQRG DAVSSLVYEA NARMRDPVYG CVGAISFLQN QVSQLQMQLA
101: VAQAEILCIQ MQRRDDVDGG GGGPNVDDVV VPPPSSLVVG AGGGADHRHH NHMTMAAAMQ QQAMMATDDV DAFLMQNGAG ATGAIVPPQL IGMGYGGAAS
201: AGAMGETTAL KRESLWT

Best Arabidopsis Sequence Match ( AT2G30130.1 )
(BLAST)

001: MGGPGSSPCA SCKLLRRRCA KDCIFAPYFP PDDPHKFAIV HKVFGASNVS KMLQELPVHQ RADAVNSLVF EANARVRDPV YGCVGAISYL QNQVSQLQMQ
101: LAVAQAEILC IQMQNEPTLQ SHHQVLELDQ DHKALLLNNN NINNCNTNNN NNNFGYAMSS GQFNSNFASP SSIMQMQMQM QMQDPLKQES LWT

Arabidopsis Description

LBD12PCK1 [Source:UniProtKB/TrEMBL;Acc:A0A178VRK1]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.