Factsheet for Bra018335.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 4
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY10714	Canola	mitochondrion	100.0	100.0
CDY51008	Canola	mitochondrion	72.49	98.56
Bra021612.1-P	Field mustard	nucleus	94.18	93.68
AT2G30130.1	Thale cress	mitochondrion, nucleus	95.24	93.26
Bra022780.1-P	Field mustard	mitochondrion, nucleus	88.89	89.36
VIT_06s0004g07200.t01	Wine grape	mitochondrion, nucleus	69.84	80.98
Solyc06g082310.2.1	Tomato	mitochondrion, nucleus, plastid	69.84	75.86
PGSC0003DMT400078256	Potato	mitochondrion, nucleus, plastid	69.31	75.72
KRH73255	Soybean	mitochondrion, nucleus, plastid	60.85	74.68
KRH14912	Soybean	nucleus	60.32	74.51
KRG98217	Soybean	mitochondrion	67.72	74.42
KRH30173	Soybean	mitochondrion, nucleus	67.72	74.42
GSMUA_Achr5P29470_001	Banana	mitochondrion, nucleus	52.91	69.93
VIT_13s0067g01880.t01	Wine grape	mitochondrion	62.43	69.01
KRG97685	Soybean	mitochondrion, nucleus	58.2	66.67
Solyc06g050950.2.1	Tomato	mitochondrion, nucleus, plastid	58.73	64.91
PGSC0003DMT400061511	Potato	mitochondrion	58.73	64.91
TraesCS1A01G222300.1	Wheat	mitochondrion	61.9	61.9
TraesCS1B01G235700.1	Wheat	mitochondrion	61.9	61.9
TraesCS1D01G224000.1	Wheat	mitochondrion	61.9	61.9
Zm00001d038013_P001	Maize	mitochondrion	59.26	57.44
Os05t0346800-00	Rice	cytosol, nucleus	61.38	56.04
Bra025294.1-P	Field mustard	plastid	37.57	53.79
EES19343	Sorghum	mitochondrion	60.85	53.0
Bra033019.1-P	Field mustard	plastid	36.51	52.27
Bra014907.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	47.09	51.74
Bra026716.1-P	Field mustard	mitochondrion	43.92	50.61
Bra039072.1-P	Field mustard	plastid	34.92	50.38
HORVU1Hr1G060290.2	Barley	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	61.9	50.21
Bra026042.1-P	Field mustard	mitochondrion	42.86	49.69
Bra038606.1-P	Field mustard	plastid	40.74	42.54
Bra035860.1-P	Field mustard	plastid	38.1	40.91
Bra000188.1-P	Field mustard	plastid	42.33	40.2
Bra016992.1-P	Field mustard	plastid	41.8	39.3
Bra018675.1-P	Field mustard	plastid	41.27	37.86
Bra031599.1-P	Field mustard	nucleus, plastid	39.68	36.23
Bra039733.1-P	Field mustard	nucleus, plastid	38.62	36.14
Bra004572.1-P	Field mustard	cytosol, mitochondrion, nucleus	41.8	35.43
Bra035698.1-P	Field mustard	plastid	41.27	34.06
Bra011942.1-P	Field mustard	plastid	41.8	33.91
Bra000491.1-P	Field mustard	plastid	41.27	33.77
Bra018320.1-P	Field mustard	mitochondrion	40.21	32.2
Bra032153.1-P	Field mustard	mitochondrion, nucleus	38.62	23.7
Bra012112.1-P	Field mustard	nucleus, plastid	40.21	22.49
Bra037142.1-P	Field mustard	nucleus, plastid	39.15	18.78

Protein Annotations

EnsemblPlants:Bra018335.1	EnsemblPlants:Bra018335.1-P	EnsemblPlantsGene:Bra018335	InterPro:IPR004883	InterPro:LOB	ncoils:Coil
PANTHER:PTHR31301	PANTHER:PTHR31301:SF57	PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI0002547BAE
UniProt:M4DP94	MapMan:15.5.24	:	:	:	:

Description

AT2G30130 (E=5e-084) ASL5, LBD12, PCK1 | ASL5; DNA binding / protein binding

Coordinates

chrA05:-:7526963..7527792

Molecular Weight (calculated)

21080.2 Da

IEP (calculated)

6.492

GRAVY (calculated)

-0.320

Length

189 amino acids

Sequence
(BLAST)

001: MGGPGSSPCA SCKLLRRRCA KDCIFAPYFP PDDPHKFAIV HKVFGASNVS KMLQELPVHQ RADAVNSLVF EANARVRDPV YGCVGAISYL QNQVSQLQMQ
101: LAVAQAEILC IQMQQEPNLQ SHHQILELDQ DDKILLLHNN IDNCNNNSNN NLGYAMSSGQ FNSNFASPSS IMQMQMQMQD PLKQESLWT

Best Arabidopsis Sequence Match ( AT2G30130.1 )
(BLAST)

001: MGGPGSSPCA SCKLLRRRCA KDCIFAPYFP PDDPHKFAIV HKVFGASNVS KMLQELPVHQ RADAVNSLVF EANARVRDPV YGCVGAISYL QNQVSQLQMQ
101: LAVAQAEILC IQMQNEPTLQ SHHQVLELDQ DHKALLLNNN NINNCNTNNN NNNFGYAMSS GQFNSNFASP SSIMQMQMQM QMQDPLKQES LWT

Arabidopsis Description

LBD12PCK1 [Source:UniProtKB/TrEMBL;Acc:A0A178VRK1]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.