Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G222300.1 | Wheat | mitochondrion | 99.47 | 99.47 |
| TraesCS1D01G224000.1 | Wheat | mitochondrion | 98.94 | 98.94 |
| HORVU1Hr1G060290.2 | Barley | endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 98.94 | 80.26 |
| CDY51008 | Canola | mitochondrion | 57.67 | 78.42 |
| CDY72536 | Canola | mitochondrion | 56.08 | 76.81 |
| VIT_06s0004g07200.t01 | Wine grape | mitochondrion, nucleus | 64.02 | 74.23 |
| Zm00001d038013_P001 | Maize | mitochondrion | 75.66 | 73.33 |
| GSMUA_Achr3P10050_001 | Banana | cytosol, nucleus, plastid | 60.32 | 73.08 |
| GSMUA_Achr9P18030_001 | Banana | mitochondrion, nucleus, plastid | 62.43 | 72.84 |
| GSMUA_Achr6P15660_001 | Banana | mitochondrion, nucleus, plastid | 61.38 | 71.6 |
| GSMUA_Achr10P... | Banana | mitochondrion | 59.26 | 70.89 |
| Os05t0346800-00 | Rice | cytosol, nucleus | 77.25 | 70.53 |
| GSMUA_Achr10P... | Banana | mitochondrion | 58.73 | 70.25 |
| Solyc06g082310.2.1 | Tomato | mitochondrion, nucleus, plastid | 61.9 | 67.24 |
| PGSC0003DMT400078256 | Potato | mitochondrion, nucleus, plastid | 61.38 | 67.05 |
| KRH30173 | Soybean | mitochondrion, nucleus | 60.32 | 66.28 |
| KRG98217 | Soybean | mitochondrion | 59.79 | 65.7 |
| VIT_13s0067g01880.t01 | Wine grape | mitochondrion | 59.26 | 65.5 |
| EES19343 | Sorghum | mitochondrion | 75.13 | 65.44 |
| Bra021612.1-P | Field mustard | nucleus | 62.43 | 62.11 |
| Bra018335.1-P | Field mustard | mitochondrion | 61.9 | 61.9 |
| CDY10714 | Canola | mitochondrion | 61.9 | 61.9 |
| Solyc06g050950.2.1 | Tomato | mitochondrion, nucleus, plastid | 55.56 | 61.4 |
| PGSC0003DMT400061511 | Potato | mitochondrion | 55.56 | 61.4 |
| AT2G30130.1 | Thale cress | mitochondrion, nucleus | 62.43 | 61.14 |
| CDY24027 | Canola | mitochondrion | 60.32 | 60.64 |
| Bra022780.1-P | Field mustard | mitochondrion, nucleus | 60.32 | 60.64 |
| TraesCS5B01G150800.1 | Wheat | plastid | 55.56 | 59.32 |
| TraesCS4B01G016200.1 | Wheat | plastid | 42.33 | 45.71 |
| TraesCS1B01G080600.1 | Wheat | cytosol, plastid | 39.68 | 34.88 |
| TraesCS1B01G131900.2 | Wheat | nucleus | 41.27 | 32.91 |
| TraesCS4B01G197100.1 | Wheat | plastid | 38.62 | 32.74 |
| TraesCS3B01G108500.1 | Wheat | plastid | 40.74 | 29.96 |
| TraesCS1B01G270400.1 | Wheat | plastid | 39.68 | 28.52 |
| TraesCS3B01G435700.1 | Wheat | plastid | 38.62 | 28.19 |
| TraesCS4B01G079900.1 | Wheat | mitochondrion, nucleus, plastid | 40.74 | 27.11 |
| TraesCS3B01G378100.1 | Wheat | plastid | 39.68 | 25.68 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G235700.1 | EnsemblPlantsGene:TraesCS1B01G235700 | InterPro:IPR004883 | InterPro:LOB | ncoils:Coil | PANTHER:PTHR31301 |
| PANTHER:PTHR31301:SF60 | PFAM:PF03195 | PFscan:PS50891 | MapMan:15.5.24 | : | : |
Description
No Description!
Coordinates
chr1B:-:422346306..422346970
Molecular Weight (calculated)
20447.4 Da
IEP (calculated)
7.071
GRAVY (calculated)
-0.185
Length
189 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGGSPCASC KLLRRRCTKD CIFAPFFPAD DPHKFAIVHK VFGASNVSKM LLELPVQQRG DAVSSLVYEA NARVRDPVYG CVGAISFLQN QVSQLQMQLA
101: VAQAEILCIQ MQQRDGCQSK DDAGRSDGHS LAAMQQMVVD DTAAAEAFLM QNGGGGFPPQ LMSSYGGAPA SNVHHYGQQD HLKRESLWT
101: VAQAEILCIQ MQQRDGCQSK DDAGRSDGHS LAAMQQMVVD DTAAAEAFLM QNGGGGFPPQ LMSSYGGAPA SNVHHYGQQD HLKRESLWT
001: MGGPGSSPCA SCKLLRRRCA KDCIFAPYFP PDDPHKFAIV HKVFGASNVS KMLQELPVHQ RADAVNSLVF EANARVRDPV YGCVGAISYL QNQVSQLQMQ
101: LAVAQAEILC IQMQNEPTLQ SHHQVLELDQ DHKALLLNNN NINNCNTNNN NNNFGYAMSS GQFNSNFASP SSIMQMQMQM QMQDPLKQES LWT
101: LAVAQAEILC IQMQNEPTLQ SHHQVLELDQ DHKALLLNNN NINNCNTNNN NNNFGYAMSS GQFNSNFASP SSIMQMQMQM QMQDPLKQES LWT
Arabidopsis Description
LBD12PCK1 [Source:UniProtKB/TrEMBL;Acc:A0A178VRK1]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.