Factsheet for PGSC0003DMT400061511

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 4
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g050950.2.1	Tomato	mitochondrion, nucleus, plastid	94.15	94.15
CDY51008	Canola	mitochondrion	60.82	74.82
CDY72536	Canola	mitochondrion	60.23	74.64
VIT_06s0004g07200.t01	Wine grape	mitochondrion, nucleus	69.01	72.39
GSMUA_Achr9P18030_001	Banana	mitochondrion, nucleus, plastid	67.25	70.99
GSMUA_Achr6P15660_001	Banana	mitochondrion, nucleus, plastid	65.5	69.14
KRH30173	Soybean	mitochondrion, nucleus	69.01	68.6
GSMUA_Achr3P10050_001	Banana	cytosol, nucleus, plastid	61.99	67.95
VIT_13s0067g01880.t01	Wine grape	mitochondrion	67.25	67.25
PGSC0003DMT400078256	Potato	mitochondrion, nucleus, plastid	67.25	66.47
GSMUA_Achr10P...	Banana	mitochondrion	59.65	64.56
GSMUA_Achr10P...	Banana	mitochondrion	59.06	63.92
CDY10714	Canola	mitochondrion	64.91	58.73
Bra018335.1-P	Field mustard	mitochondrion	64.91	58.73
Bra021612.1-P	Field mustard	nucleus	64.91	58.42
CDY24027	Canola	mitochondrion	63.74	57.98
Bra022780.1-P	Field mustard	mitochondrion, nucleus	63.74	57.98
AT2G30130.1	Thale cress	mitochondrion, nucleus	64.91	57.51
TraesCS1D01G224000.1	Wheat	mitochondrion	61.4	55.56
TraesCS1B01G235700.1	Wheat	mitochondrion	61.4	55.56
TraesCS1A01G222300.1	Wheat	mitochondrion	61.4	55.56
Zm00001d038013_P001	Maize	mitochondrion	60.82	53.33
PGSC0003DMT400054637	Potato	cytosol, nucleus, plastid	49.71	52.8
Os05t0346800-00	Rice	cytosol, nucleus	62.57	51.69
PGSC0003DMT400022286	Potato	cytosol, mitochondrion, nucleus, plastid	51.46	51.46
PGSC0003DMT400061283	Potato	mitochondrion, nucleus	47.37	47.93
EES19343	Sorghum	mitochondrion	60.82	47.93
HORVU1Hr1G060290.2	Barley	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	61.4	45.06
PGSC0003DMT400038248	Potato	nucleus	32.16	42.97
PGSC0003DMT400032875	Potato	plastid	38.6	42.04
PGSC0003DMT400010597	Potato	cytosol, nucleus, plastid	41.52	41.04
PGSC0003DMT400069646	Potato	plastid	39.18	38.29
PGSC0003DMT400017805	Potato	plastid	36.84	37.5
PGSC0003DMT400019410	Potato	plastid	43.27	37.37
PGSC0003DMT400065346	Potato	plastid	45.03	36.84
PGSC0003DMT400046644	Potato	nucleus, plastid	40.94	36.65
PGSC0003DMT400078265	Potato	cytosol, nucleus, plastid	46.2	35.59
PGSC0003DMT400002549	Potato	plastid	39.18	35.45
PGSC0003DMT400052995	Potato	plastid	41.52	35.32
PGSC0003DMT400065297	Potato	plastid	42.69	33.8
PGSC0003DMT400074783	Potato	mitochondrion	45.61	28.47
PGSC0003DMT400002013	Potato	nucleus	40.94	24.39
PGSC0003DMT400002011	Potato	nucleus	39.77	23.61
PGSC0003DMT400025959	Potato	nucleus	40.35	22.04
PGSC0003DMT400008972	Potato	cytosol	4.09	4.73
PGSC0003DMT400041848	Potato	nucleus	1.17	2.53

Protein Annotations

EnsemblPlants:PGSC0003DMT400061511	EnsemblPlantsGene:PGSC0003DMG400023939	EntrezGene:102586400	InterPro:IPR004883	InterPro:LOB	ncoils:Coil
PANTHER:PTHR31301	PANTHER:PTHR31301:SF57	PFAM:PF03195	PFscan:PS50891	PGSC:PGSC0003DMG400023939	RefSeq:XP_006353440.1
SEG:seg	UniParc:UPI000296A390	UniProt:M1C7L9	MapMan:15.5.24	:	:

Description

LOB domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400023939]

Coordinates

chr6:+:30180059..30181222

Molecular Weight (calculated)

18988.7 Da

IEP (calculated)

6.077

GRAVY (calculated)

-0.180

Length

171 amino acids

Sequence
(BLAST)

001: MGAGNSPCAS CKLLRRRCAK DCIFSPYFPC DDPHKFAIVH KVFGASNISK MLQEVPVNER ADAVSSLVYE ANARMRDPVY GCVGAISYLQ NQVTQLQMQL
101: AMAQAEILCI QMQSEPPQAA AAAAFPMTPD NQLVPNDHDI DKSFFLSDQY LNFDSTSHKC CNSQDGLFLW R

Best Arabidopsis Sequence Match ( AT2G30130.1 )
(BLAST)

001: MGGPGSSPCA SCKLLRRRCA KDCIFAPYFP PDDPHKFAIV HKVFGASNVS KMLQELPVHQ RADAVNSLVF EANARVRDPV YGCVGAISYL QNQVSQLQMQ
101: LAVAQAEILC IQMQNEPTLQ SHHQVLELDQ DHKALLLNNN NINNCNTNNN NNNFGYAMSS GQFNSNFASP SSIMQMQMQM QMQDPLKQES LWT

Arabidopsis Description

LBD12PCK1 [Source:UniProtKB/TrEMBL;Acc:A0A178VRK1]
SUBAcon: [nucleus,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.