Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES19343 | Sorghum | mitochondrion | 88.72 | 79.72 |
| CDY51008 | Canola | mitochondrion | 54.36 | 76.26 |
| TraesCS1D01G224000.1 | Wheat | mitochondrion | 73.33 | 75.66 |
| TraesCS1B01G235700.1 | Wheat | mitochondrion | 73.33 | 75.66 |
| TraesCS1A01G222300.1 | Wheat | mitochondrion | 73.33 | 75.66 |
| CDY72536 | Canola | mitochondrion | 52.82 | 74.64 |
| GSMUA_Achr9P18030_001 | Banana | mitochondrion, nucleus, plastid | 60.0 | 72.22 |
| GSMUA_Achr10P... | Banana | mitochondrion | 58.46 | 72.15 |
| GSMUA_Achr3P10050_001 | Banana | cytosol, nucleus, plastid | 57.44 | 71.79 |
| GSMUA_Achr10P... | Banana | mitochondrion | 57.95 | 71.52 |
| GSMUA_Achr6P15660_001 | Banana | mitochondrion, nucleus, plastid | 58.97 | 70.99 |
| VIT_06s0004g07200.t01 | Wine grape | mitochondrion, nucleus | 58.97 | 70.55 |
| Os05t0346800-00 | Rice | cytosol, nucleus | 73.33 | 69.08 |
| KRH30173 | Soybean | mitochondrion, nucleus | 57.95 | 65.7 |
| Solyc06g082310.2.1 | Tomato | mitochondrion, nucleus, plastid | 58.46 | 65.52 |
| PGSC0003DMT400078256 | Potato | mitochondrion, nucleus, plastid | 57.95 | 65.32 |
| KRG98217 | Soybean | mitochondrion | 57.44 | 65.12 |
| VIT_13s0067g01880.t01 | Wine grape | mitochondrion | 56.92 | 64.91 |
| HORVU1Hr1G060290.2 | Barley | endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 72.82 | 60.94 |
| PGSC0003DMT400061511 | Potato | mitochondrion | 53.33 | 60.82 |
| Solyc06g050950.2.1 | Tomato | mitochondrion, nucleus, plastid | 53.33 | 60.82 |
| Bra018335.1-P | Field mustard | mitochondrion | 57.44 | 59.26 |
| CDY10714 | Canola | mitochondrion | 57.44 | 59.26 |
| Bra021612.1-P | Field mustard | nucleus | 57.44 | 58.95 |
| AT2G30130.1 | Thale cress | mitochondrion, nucleus | 57.44 | 58.03 |
| Bra022780.1-P | Field mustard | mitochondrion, nucleus | 55.9 | 57.98 |
| CDY24027 | Canola | mitochondrion | 55.9 | 57.98 |
| Zm00001d013625_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 43.59 | 42.71 |
| Zm00001d033466_P001 | Maize | plastid | 42.05 | 38.86 |
| Zm00001d010978_P001 | Maize | plastid | 38.46 | 35.38 |
| Zm00001d035498_P001 | Maize | plastid | 38.46 | 33.94 |
| Zm00001d009823_P001 | Maize | plastid | 35.38 | 31.51 |
| Zm00001d047752_P001 | Maize | plastid | 37.95 | 30.96 |
| Zm00001d028721_P001 | Maize | plastid | 36.92 | 30.64 |
| Zm00001d043036_P001 | Maize | cytosol | 36.41 | 29.96 |
| Zm00001d042560_P002 | Maize | plastid | 37.44 | 28.08 |
| Zm00001d039694_P001 | Maize | plastid | 36.41 | 27.2 |
| Zm00001d033335_P001 | Maize | plastid | 37.95 | 26.33 |
| Zm00001d010264_P001 | Maize | plastid | 36.41 | 25.72 |
| Zm00001d038197_P001 | Maize | plastid | 35.9 | 25.18 |
| Zm00001d013732_P001 | Maize | plastid | 37.44 | 24.41 |
| Zm00001d047521_P001 | Maize | plastid | 25.13 | 20.76 |
Protein Annotations
| EnsemblPlants:Zm00001d038013_P001 | EnsemblPlants:Zm00001d038013_T001 | EnsemblPlantsGene:Zm00001d038013 | EntrezGene:103630272 | InterPro:IPR004883 | InterPro:LOB |
| ncoils:Coil | PANTHER:PTHR31301 | PANTHER:PTHR31301:SF60 | PFAM:PF03195 | PFscan:PS50891 | ProteinID:AQK85472.1 |
| SEG:seg | UniParc:UPI000221EDE8 | UniProt:A0A1D6M2R3 | MapMan:15.5.24 | : | : |
Description
LBD-transcription factor 31Putative LOB domain-containing family protein
Coordinates
chr6:-:145148378..145149283
Molecular Weight (calculated)
20847.1 Da
IEP (calculated)
6.333
GRAVY (calculated)
0.005
Length
195 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGGSPCASC KLLRRRCTKD CIFAPFFPAD DPHKFAIVHR VFGASNVSKM LQELPVQQRG DAVSSLVYEA NARMRDPVYG CVGAISFLQN QVSQLQMQLA
101: VAQAEILCIQ MQRRDDGAGP DVDVVVPPPS LVAAAAAAGA SHHHQMTVEM QQQAMATDDD VDAFLMQNAG AGAIPPQLMC YGGAASALKR ESLWT
101: VAQAEILCIQ MQRRDDGAGP DVDVVVPPPS LVAAAAAAGA SHHHQMTVEM QQQAMATDDD VDAFLMQNAG AGAIPPQLMC YGGAASALKR ESLWT
001: MGGPGSSPCA SCKLLRRRCA KDCIFAPYFP PDDPHKFAIV HKVFGASNVS KMLQELPVHQ RADAVNSLVF EANARVRDPV YGCVGAISYL QNQVSQLQMQ
101: LAVAQAEILC IQMQNEPTLQ SHHQVLELDQ DHKALLLNNN NINNCNTNNN NNNFGYAMSS GQFNSNFASP SSIMQMQMQM QMQDPLKQES LWT
101: LAVAQAEILC IQMQNEPTLQ SHHQVLELDQ DHKALLLNNN NINNCNTNNN NNNFGYAMSS GQFNSNFASP SSIMQMQMQM QMQDPLKQES LWT
Arabidopsis Description
LBD12PCK1 [Source:UniProtKB/TrEMBL;Acc:A0A178VRK1]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.