Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER93717 | Sorghum | plastid | 91.96 | 88.41 |
| Zm00001d033466_P001 | Maize | plastid | 83.92 | 79.15 |
| TraesCS4B01G016200.1 | Wheat | plastid | 63.32 | 72.0 |
| HORVU4Hr1G002480.2 | Barley | cytosol | 63.82 | 71.35 |
| TraesCS4A01G297500.1 | Wheat | plastid | 61.81 | 71.1 |
| KRH50484 | Soybean | cytosol, nucleus, plastid | 50.75 | 63.52 |
| KRG89441 | Soybean | cytosol, nucleus, plastid | 51.26 | 62.2 |
| KRH11753 | Soybean | cytosol, mitochondrion, nucleus, plastid | 51.26 | 60.0 |
| GSMUA_Achr5P02190_001 | Banana | mitochondrion | 49.75 | 59.64 |
| PGSC0003DMT400022286 | Potato | cytosol, mitochondrion, nucleus, plastid | 50.75 | 59.06 |
| Solyc11g045530.1.1 | Tomato | cytosol, mitochondrion, nucleus, plastid | 50.75 | 59.06 |
| KRH36753 | Soybean | cytosol, mitochondrion, nucleus, plastid | 50.25 | 58.82 |
| Solyc02g069440.2.1 | Tomato | nucleus | 47.24 | 58.39 |
| PGSC0003DMT400054637 | Potato | cytosol, nucleus, plastid | 47.24 | 58.39 |
| VIT_19s0027g01120.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 49.25 | 57.65 |
| GSMUA_Achr2P13170_001 | Banana | nucleus | 50.25 | 57.47 |
| VIT_00s0125g00290.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 50.25 | 57.14 |
| AT1G31320.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 48.74 | 56.4 |
| Bra014907.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 48.74 | 56.4 |
| CDX77553 | Canola | cytosol, mitochondrion, nucleus, plastid | 48.74 | 56.4 |
| GSMUA_Achr4P32000_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 51.26 | 56.04 |
| GSMUA_Achr7P00880_001 | Banana | cytosol, nucleus, plastid | 52.26 | 55.91 |
| CDY50718 | Canola | cytosol, mitochondrion, nucleus, plastid | 48.24 | 55.81 |
| KRH43747 | Soybean | mitochondrion | 49.25 | 55.37 |
| KRH13706 | Soybean | mitochondrion | 47.74 | 53.37 |
| CDX81767 | Canola | cytosol, nucleus, plastid | 43.72 | 53.05 |
| CDY40054 | Canola | mitochondrion | 43.22 | 52.76 |
| Bra026042.1-P | Field mustard | mitochondrion | 42.71 | 52.15 |
| CDY66794 | Canola | mitochondrion | 42.71 | 52.15 |
| CDY50999 | Canola | cytosol, mitochondrion, plastid | 42.71 | 51.83 |
| Bra026716.1-P | Field mustard | mitochondrion | 42.21 | 51.22 |
| PGSC0003DMT400061283 | Potato | mitochondrion, nucleus | 43.22 | 50.89 |
| AT1G16530.1 | Thale cress | mitochondrion | 41.71 | 50.3 |
| Solyc12g100150.1.1 | Tomato | mitochondrion | 42.21 | 50.0 |
| Zm00001d038013_P001 | Maize | mitochondrion | 42.71 | 43.59 |
| TraesCS4D01G014600.1 | Wheat | nucleus | 62.31 | 42.18 |
| Zm00001d010978_P001 | Maize | plastid | 40.7 | 38.21 |
| Zm00001d035498_P001 | Maize | plastid | 40.2 | 36.2 |
| Zm00001d009823_P001 | Maize | plastid | 38.19 | 34.7 |
| Zm00001d043036_P001 | Maize | cytosol | 38.69 | 32.49 |
| Zm00001d039694_P001 | Maize | plastid | 40.7 | 31.03 |
| Zm00001d028721_P001 | Maize | plastid | 35.68 | 30.21 |
| Zm00001d047752_P001 | Maize | plastid | 35.68 | 29.71 |
| Zm00001d042560_P002 | Maize | plastid | 34.17 | 26.15 |
| Zm00001d033335_P001 | Maize | plastid | 35.18 | 24.91 |
| Zm00001d013732_P001 | Maize | plastid | 35.68 | 23.75 |
| Zm00001d038197_P001 | Maize | plastid | 33.17 | 23.74 |
| Zm00001d010264_P001 | Maize | plastid | 32.16 | 23.19 |
| Zm00001d047521_P001 | Maize | plastid | 24.12 | 20.34 |
Protein Annotations
| EnsemblPlants:Zm00001d013625_P001 | EnsemblPlants:Zm00001d013625_T001 | EnsemblPlantsGene:Zm00001d013625 | InterPro:IPR004883 | InterPro:LOB | ncoils:Coil |
| PANTHER:PTHR31301 | PANTHER:PTHR31301:SF15 | PFAM:PF03195 | PFscan:PS50891 | ProteinID:AQK64046.1 | SEG:seg |
| UniParc:UPI0001CA9B2F | UniProt:A0A1D6GL54 | MapMan:15.5.24 | : | : | : |
Description
LBD-transcription factor 26LOB domain-containing protein 4
Coordinates
chr5:-:15732403..15735219
Molecular Weight (calculated)
20690.6 Da
IEP (calculated)
7.840
GRAVY (calculated)
-0.070
Length
199 amino acids
Sequence
(BLAST)
(BLAST)
001: MRDAVVVMAV PGGGGGGGGS ASSAAAAPCA ACKLLRRRCA AGCVFAPYFP PGEPHKFANV HKVFGASNVS KLLQEIPAQH RGDAVSSLVY EANARVRDPV
101: YGCVGAISSL QEQVEALQAQ LALAQAEMVR LRMTNDYIVH RLKAASRAGG GGSSYAGSPS SMSSPKTAEP EAHCKATPEL LDMVVDQPGM DDAHFWSSY
101: YGCVGAISSL QEQVEALQAQ LALAQAEMVR LRMTNDYIVH RLKAASRAGG GGSSYAGSPS SMSSPKTAEP EAHCKATPEL LDMVVDQPGM DDAHFWSSY
001: MRQKGHRHGR TVSPCAGCKL LRRKCVKDSC VFAPYFPAKE PYKFAIVHKI FGASNVNKML QELSENHRSD AVDSMVYEAN ARIQDPVYGC VGTISSLHRQ
101: LETLQTQLAF AQAELIHIRT LHRIHTKPPP YTASTVTFPS NKDFYSDIDM AVAYTDDAGD FLWSC
101: LETLQTQLAF AQAELIHIRT LHRIHTKPPP YTASTVTFPS NKDFYSDIDM AVAYTDDAGD FLWSC
Arabidopsis Description
LBD3LOB domain-containing protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA51]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.