Factsheet for GSMUA_Achr7P00880_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P32000_001	Banana	cytosol, mitochondrion, nucleus, plastid	76.88	78.57
GSMUA_Achr2P13170_001	Banana	nucleus	70.97	75.86
GSMUA_Achr5P02190_001	Banana	mitochondrion	62.9	70.48
KRH50484	Soybean	cytosol, nucleus, plastid	58.06	67.92
KRG89441	Soybean	cytosol, nucleus, plastid	59.14	67.07
VIT_00s0125g00290.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	58.6	62.29
Solyc02g069440.2.1	Tomato	nucleus	53.23	61.49
PGSC0003DMT400054637	Potato	cytosol, nucleus, plastid	53.23	61.49
PGSC0003DMT400022286	Potato	cytosol, mitochondrion, nucleus, plastid	55.91	60.82
Solyc11g045530.1.1	Tomato	cytosol, mitochondrion, nucleus, plastid	55.38	60.23
KRH11753	Soybean	cytosol, mitochondrion, nucleus, plastid	54.84	60.0
KRH36753	Soybean	cytosol, mitochondrion, nucleus, plastid	54.84	60.0
VIT_19s0027g01120.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	54.84	60.0
CDX77553	Canola	cytosol, mitochondrion, nucleus, plastid	53.76	58.14
Bra014907.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	53.76	58.14
CDY50718	Canola	cytosol, mitochondrion, nucleus, plastid	53.23	57.56
AT1G31320.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	53.23	57.56
GSMUA_Achr5P29470_001	Banana	mitochondrion, nucleus	44.09	57.34
KRH43747	Soybean	mitochondrion	53.76	56.5
KRH13706	Soybean	mitochondrion	53.23	55.62
TraesCS4B01G016200.1	Wheat	plastid	51.61	54.86
GSMUA_Achr3P10050_001	Banana	cytosol, nucleus, plastid	45.7	54.49
TraesCS4A01G297500.1	Wheat	plastid	50.0	53.76
Solyc12g100150.1.1	Tomato	mitochondrion	48.39	53.57
CDY40054	Canola	mitochondrion	46.77	53.37
HORVU4Hr1G002480.2	Barley	cytosol	51.08	53.37
GSMUA_Achr10P...	Banana	mitochondrion	45.16	53.16
CDY50999	Canola	cytosol, mitochondrion, plastid	46.77	53.05
Bra026042.1-P	Field mustard	mitochondrion	46.24	52.76
CDY66794	Canola	mitochondrion	46.24	52.76
GSMUA_Achr10P...	Banana	mitochondrion	44.62	52.53
GSMUA_Achr6P15660_001	Banana	mitochondrion, nucleus, plastid	45.7	52.47
CDX81767	Canola	cytosol, nucleus, plastid	46.24	52.44
Bra026716.1-P	Field mustard	mitochondrion	46.24	52.44
Zm00001d013625_P001	Maize	cytosol, mitochondrion, nucleus, plastid	55.91	52.26
GSMUA_Achr9P18030_001	Banana	mitochondrion, nucleus, plastid	45.16	51.85
AT1G16530.1	Thale cress	mitochondrion	45.7	51.52
PGSC0003DMT400061283	Potato	mitochondrion, nucleus	46.77	51.48
EER93717	Sorghum	plastid	55.91	50.24
GSMUA_Achr8P02800_001	Banana	mitochondrion, nucleus	43.01	49.08
Zm00001d033466_P001	Maize	plastid	53.23	46.92
GSMUA_Achr6P33070_001	Banana	plastid	41.94	39.8
GSMUA_Achr7P15500_001	Banana	nucleus	40.32	38.27
GSMUA_Achr9P04330_001	Banana	plastid	36.02	37.64
GSMUA_AchrUn_...	Banana	plastid	36.56	36.96
GSMUA_Achr4P16790_001	Banana	plastid	36.56	35.79
GSMUA_Achr8P09700_001	Banana	cytosol	37.1	33.82
GSMUA_Achr11P...	Banana	cytosol	39.25	33.64
GSMUA_Achr5P07460_001	Banana	nucleus	37.63	33.49
GSMUA_Achr7P22200_001	Banana	nucleus	37.63	33.18
TraesCS4D01G014600.1	Wheat	nucleus	52.15	32.99
GSMUA_Achr10P...	Banana	plastid	40.86	30.4
GSMUA_Achr3P17800_001	Banana	mitochondrion, plastid	37.63	29.91
GSMUA_Achr6P04670_001	Banana	mitochondrion	35.48	22.92
GSMUA_Achr2P17160_001	Banana	mitochondrion	29.03	17.94

Protein Annotations

EnsemblPlants:GSMUA_Achr7P00880_001	EnsemblPlants:GSMUA_Achr7T00880_001	EnsemblPlantsGene:GSMUA_Achr7G00880_001	InterPro:IPR004883	InterPro:LOB	ncoils:Coil
PANTHER:PTHR31301	PANTHER:PTHR31301:SF7	PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI000296A078
UniProt:M0TDM8	MapMan:15.5.24	:	:	:	:

Description

Whole genome shotgun sequence of line PN40024, scaffold_125.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr7G00880_001]

Coordinates

chr7:+:690401..691336

Molecular Weight (calculated)

20077.2 Da

IEP (calculated)

8.521

GRAVY (calculated)

-0.103

Length

186 amino acids

Sequence
(BLAST)

001: MKEVARKHNT VSPCAACKLL RRRCTQDCIF APHFPADEPH KFANVHKVFG ASNVSKLLQE IAVQHRGDAV SSLVYEANAR VRDPVYGCVA AISTLHRQIQ
101: ALQAQLAMAQ AQMVHLRMSH AASLAHAGLG HSPMGAGSTS TGSSSMSPTH NQLMEPDTVN AKPVFALDMV VLDQTNLGSE PPIWSF

Best Arabidopsis Sequence Match ( AT1G16530.1 )
(BLAST)

001: MRQKGHRHGR TVSPCAGCKL LRRKCVKDSC VFAPYFPAKE PYKFAIVHKI FGASNVNKML QELSENHRSD AVDSMVYEAN ARIQDPVYGC VGTISSLHRQ
101: LETLQTQLAF AQAELIHIRT LHRIHTKPPP YTASTVTFPS NKDFYSDIDM AVAYTDDAGD FLWSC

Arabidopsis Description

LBD3LOB domain-containing protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA51]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.