Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400054637 | Potato | cytosol, nucleus, plastid | 96.89 | 96.89 |
| KRH50484 | Soybean | cytosol, nucleus, plastid | 70.81 | 71.7 |
| KRG89441 | Soybean | cytosol, nucleus, plastid | 70.81 | 69.51 |
| AT1G31320.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 71.43 | 66.86 |
| Bra014907.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 70.81 | 66.28 |
| CDX77553 | Canola | cytosol, mitochondrion, nucleus, plastid | 70.81 | 66.28 |
| CDY50718 | Canola | cytosol, mitochondrion, nucleus, plastid | 70.19 | 65.7 |
| Solyc11g045530.1.1 | Tomato | cytosol, mitochondrion, nucleus, plastid | 69.57 | 65.5 |
| KRH36753 | Soybean | cytosol, mitochondrion, nucleus, plastid | 68.94 | 65.29 |
| KRH11753 | Soybean | cytosol, mitochondrion, nucleus, plastid | 68.94 | 65.29 |
| VIT_00s0125g00290.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 69.57 | 64.0 |
| Solyc12g100150.1.1 | Tomato | mitochondrion | 57.14 | 54.76 |
| GSMUA_Achr5P02190_001 | Banana | mitochondrion | 55.28 | 53.61 |
| GSMUA_Achr7P00880_001 | Banana | cytosol, nucleus, plastid | 61.49 | 53.23 |
| TraesCS4A01G297500.1 | Wheat | plastid | 56.52 | 52.6 |
| GSMUA_Achr2P13170_001 | Banana | nucleus | 56.52 | 52.3 |
| TraesCS4B01G016200.1 | Wheat | plastid | 56.52 | 52.0 |
| Solyc06g082310.2.1 | Tomato | mitochondrion, nucleus, plastid | 55.28 | 51.15 |
| HORVU4Hr1G002480.2 | Barley | cytosol | 56.52 | 51.12 |
| GSMUA_Achr4P32000_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 57.14 | 50.55 |
| Solyc06g050950.2.1 | Tomato | mitochondrion, nucleus, plastid | 53.42 | 50.29 |
| Zm00001d013625_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 58.39 | 47.24 |
| EER93717 | Sorghum | plastid | 60.25 | 46.86 |
| Zm00001d033466_P001 | Maize | plastid | 57.76 | 44.08 |
| Solyc02g086480.1.1 | Tomato | plastid | 39.75 | 42.95 |
| Solyc04g050010.1.1 | Tomato | cytosol | 43.48 | 42.42 |
| Solyc11g072470.1.1 | Tomato | plastid | 49.07 | 41.8 |
| Solyc02g067800.2.1 | Tomato | plastid | 42.24 | 40.48 |
| Solyc03g063140.2.1 | Tomato | nucleus, plastid | 43.48 | 40.23 |
| Solyc06g005090.2.1 | Tomato | plastid | 49.07 | 39.9 |
| Solyc01g044520.1.1 | Tomato | nucleus | 40.37 | 38.01 |
| Solyc03g112430.1.1 | Tomato | nucleus, plastid | 44.1 | 36.22 |
| Solyc05g048740.2.1 | Tomato | nucleus, plastid | 47.83 | 35.81 |
| Solyc06g050430.2.1 | Tomato | nucleus | 47.83 | 35.48 |
| Solyc06g082430.1.1 | Tomato | cytosol, nucleus, plastid | 47.83 | 33.19 |
| Solyc06g071660.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 40.99 | 32.51 |
| Solyc06g007390.2.1 | Tomato | nucleus | 47.83 | 32.35 |
| TraesCS4D01G014600.1 | Wheat | nucleus | 56.52 | 30.95 |
| Solyc11g008830.1.1 | Tomato | plastid | 43.48 | 30.43 |
| Solyc06g075330.1.1 | Tomato | golgi, nucleus, plastid | 42.24 | 28.1 |
| Solyc02g065150.1.1 | Tomato | nucleus | 41.61 | 23.02 |
| Solyc02g090410.2.1 | Tomato | mitochondrion, plastid | 43.48 | 22.22 |
Protein Annotations
| EnsemblPlants:Solyc02g069440.2.1 | EnsemblPlantsGene:Solyc02g069440.2 | InterPro:IPR004883 | InterPro:LOB | ncoils:Coil | PANTHER:PTHR31301 |
| PANTHER:PTHR31301:SF7 | PFAM:PF03195 | PFscan:PS50891 | UniParc:UPI00027680C0 | UniProt:K4B7S6 | MapMan:15.5.24 |
Description
LOB domain-containing protein 4 [Source:Projected from Arabidopsis thaliana (AT1G31320) UniProtKB/Swiss-Prot;Acc:Q9SHE9]
Coordinates
chr2:+:39334788..39337495
Molecular Weight (calculated)
17944.4 Da
IEP (calculated)
8.127
GRAVY (calculated)
-0.506
Length
161 amino acids
Sequence
(BLAST)
(BLAST)
001: MKECGKNSSS PCAACKLLRR RCGHDCVFSP YFPADEPHKF ANVHKVFGAS NVSKMLQELP EHKRGDAVSS MVYEANARVR DPVYGCVGAI SSLQQQIDML
101: RTQLAMTQAE VVQLRLRQST SITNSPPNSG SPIMGSQPKG YYHMDLDVDQ SNTFNEPMWP Y
101: RTQLAMTQAE VVQLRLRQST SITNSPPNSG SPIMGSQPKG YYHMDLDVDQ SNTFNEPMWP Y
001: MKESSRKQGA ASPCAACKLL RRRCAQDCVF SPYFPADEPQ KFANVHRVFG ASNVNKMLQE LPIHQRGDAV SSMVYEANAR VRDPVYGCVG AISSLQQQID
101: VLQAQLALAQ AEVVHLRVRQ STNFPGHGLC PDSPSSSGSP SSKQVSPQDN KGMFSHMDIV DEASLGESMW SC
101: VLQAQLALAQ AEVVHLRVRQ STNFPGHGLC PDSPSSSGSP SSKQVSPQDN KGMFSHMDIV DEASLGESMW SC
Arabidopsis Description
LBD4LOB domain-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHE9]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.