Factsheet for Solyc03g112430.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400046644	Potato	nucleus, plastid	88.27	90.58
VIT_17s0000g09010.t01	Wine grape	plastid	67.86	72.28
KRH54338	Soybean	plastid	67.35	71.35
KRH63606	Soybean	plastid	65.82	70.88
Solyc02g086480.1.1	Tomato	plastid	52.04	68.46
KRH03242	Soybean	nucleus, plastid	64.29	66.67
CDY48125	Canola	plastid	57.65	64.2
CDY16738	Canola	plastid	57.14	63.64
KRH57118	Soybean	plastid	63.78	63.45
Bra038606.1-P	Field mustard	plastid	57.65	62.43
CDY68853	Canola	plastid	57.65	62.43
CDY69697	Canola	plastid	57.65	62.43
Bra035860.1-P	Field mustard	plastid	55.61	61.93
Solyc02g067800.2.1	Tomato	plastid	50.51	58.93
AT5G63090.3	Thale cress	plastid	55.1	58.06
Solyc06g071660.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	58.16	56.16
Solyc03g063140.2.1	Tomato	nucleus, plastid	45.41	51.15
Os01t0169400-01	Rice	plastid	57.14	44.62
Solyc02g069440.2.1	Tomato	nucleus	36.22	44.1
TraesCS3B01G108500.1	Wheat	plastid	57.14	43.58
TraesCS3A01G093200.1	Wheat	plastid	57.14	43.58
TraesCS3D01G093500.1	Wheat	plastid	57.14	43.58
Solyc11g045530.1.1	Tomato	cytosol, mitochondrion, nucleus, plastid	37.24	42.69
Solyc06g050950.2.1	Tomato	mitochondrion, nucleus, plastid	37.24	42.69
Solyc06g082310.2.1	Tomato	mitochondrion, nucleus, plastid	37.76	42.53
Zm00001d039694_P001	Maize	plastid	56.12	42.15
EES00235	Sorghum	plastid	56.12	41.04
HORVU3Hr1G016690.1	Barley	plastid	57.14	40.43
Solyc11g008830.1.1	Tomato	plastid	46.94	40.0
Solyc12g100150.1.1	Tomato	mitochondrion	34.18	39.88
Solyc01g044520.1.1	Tomato	nucleus	33.67	38.6
Solyc04g050010.1.1	Tomato	cytosol	31.12	36.97
Solyc11g072470.1.1	Tomato	plastid	33.16	34.39
Solyc06g050430.2.1	Tomato	nucleus	37.24	33.64
Solyc06g005090.2.1	Tomato	plastid	33.67	33.33
Solyc06g007390.2.1	Tomato	nucleus	38.27	31.51
Solyc06g082430.1.1	Tomato	cytosol, nucleus, plastid	36.22	30.6
Solyc02g065150.1.1	Tomato	nucleus	44.9	30.24
Solyc05g048740.2.1	Tomato	nucleus, plastid	32.65	29.77
Solyc02g090410.2.1	Tomato	mitochondrion, plastid	42.35	26.35
Solyc06g075330.1.1	Tomato	golgi, nucleus, plastid	28.06	22.73

Protein Annotations

EnsemblPlants:Solyc03g112430.1.1	EnsemblPlantsGene:Solyc03g112430.1	InterPro:IPR004883	InterPro:LOB	ncoils:Coil	PANTHER:PTHR31301
PANTHER:PTHR31301:SF12	PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI00027674C3	UniProt:K4BK97
MapMan:15.5.24	:	:	:	:	:

Description

No Description!

Coordinates

chr3:-:62836808..62837398

Molecular Weight (calculated)

21880.5 Da

IEP (calculated)

7.884

GRAVY (calculated)

-0.605

Length

196 amino acids

Sequence
(BLAST)

001: MASSSSYNSP CAACKFLRRK CLPGCIFSPY FPPEEPQKFI NVHKIFGASN VTKLLNELHP NQREDAVNSL AYEAEARVRD PVYGCVGAIS FLQRQVERLQ
101: KELDAANADL IRYACNEFTS STAPPPLPVH QNTILRQRSV EFTRRQYHHD VGAGGGGGFY QTSSYPIPYS NSYPNWNDHQ NSTGDHHQHI HGGGSI

Best Arabidopsis Sequence Match ( AT5G63090.1 )
(BLAST)

001: MASSSNSYNS PCAACKFLRR KCMPGCIFAP YFPPEEPHKF ANVHKIFGAS NVTKLLNELL PHQREDAVNS LAYEAEARVR DPVYGCVGAI SYLQRQVHRL
101: QKELDAANAD LAHYGLSTSA AGAPGNVVDL VFQPQPLPSQ QLPPLNPVYR LSGASPVMNQ MPRGTGGSYG TFLPWNNGHD QQGGNM

Arabidopsis Description

LOBLOB [Source:UniProtKB/TrEMBL;Acc:A0A178UKE6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.