Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH54338 | Soybean | plastid | 75.54 | 75.14 |
| KRH63606 | Soybean | plastid | 72.83 | 73.63 |
| KRH03242 | Soybean | nucleus, plastid | 73.37 | 71.43 |
| PGSC0003DMT400046644 | Potato | nucleus, plastid | 73.91 | 71.2 |
| KRH57118 | Soybean | plastid | 72.83 | 68.02 |
| PGSC0003DMT400069646 | Potato | plastid | 64.67 | 68.0 |
| Solyc03g112430.1.1 | Tomato | nucleus, plastid | 72.28 | 67.86 |
| CDY16738 | Canola | plastid | 64.13 | 67.05 |
| CDY48125 | Canola | plastid | 64.13 | 67.05 |
| VIT_14s0066g00680.t01 | Wine grape | nucleus, plastid | 60.33 | 65.29 |
| Bra038606.1-P | Field mustard | plastid | 64.13 | 65.19 |
| CDY68853 | Canola | plastid | 64.13 | 65.19 |
| CDY69697 | Canola | plastid | 64.13 | 65.19 |
| Bra035860.1-P | Field mustard | plastid | 61.96 | 64.77 |
| AT5G63090.3 | Thale cress | plastid | 63.04 | 62.37 |
| Solyc06g071660.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 64.13 | 58.13 |
| Os01t0169400-01 | Rice | plastid | 61.41 | 45.02 |
| VIT_06s0004g07200.t01 | Wine grape | mitochondrion, nucleus | 39.67 | 44.79 |
| VIT_00s0125g00290.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 41.85 | 44.0 |
| VIT_13s0019g03760.t01 | Wine grape | plastid | 32.61 | 43.8 |
| VIT_13s0067g01880.t01 | Wine grape | mitochondrion | 40.22 | 43.27 |
| TraesCS3D01G093500.1 | Wheat | plastid | 59.78 | 42.8 |
| TraesCS3A01G093200.1 | Wheat | plastid | 59.78 | 42.8 |
| TraesCS3B01G108500.1 | Wheat | plastid | 59.78 | 42.8 |
| Zm00001d039694_P001 | Maize | plastid | 60.33 | 42.53 |
| VIT_00s0340g00090.t01 | Wine grape | nucleus | 49.46 | 42.13 |
| VIT_19s0027g01120.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 38.59 | 41.76 |
| EES00235 | Sorghum | plastid | 60.33 | 41.42 |
| HORVU3Hr1G016690.1 | Barley | plastid | 59.78 | 39.71 |
| VIT_13s0019g03710.t01 | Wine grape | nucleus, plastid | 33.15 | 36.97 |
| VIT_13s0019g03750.t01 | Wine grape | plastid | 34.78 | 36.78 |
| VIT_00s1247g00010.t01 | Wine grape | nucleus | 47.83 | 36.51 |
| VIT_13s0019g03720.t01 | Wine grape | nucleus, plastid | 30.98 | 35.19 |
| VIT_07s0197g00030.t01 | Wine grape | nucleus | 46.2 | 34.69 |
| VIT_13s0019g03780.t01 | Wine grape | plastid | 32.07 | 34.1 |
| VIT_13s0019g03700.t01 | Wine grape | plastid | 36.41 | 34.01 |
| VIT_13s0067g02380.t01 | Wine grape | nucleus | 40.76 | 33.48 |
| VIT_06s0004g03350.t01 | Wine grape | plastid | 36.41 | 32.84 |
| VIT_06s0004g03330.t01 | Wine grape | nucleus, plastid | 34.78 | 31.68 |
| VIT_16s0022g02050.t01 | Wine grape | cytosol, mitochondrion, nucleus | 47.28 | 30.31 |
| VIT_07s0197g00020.t01 | Wine grape | nucleus | 47.83 | 30.14 |
| VIT_06s0004g07790.t01 | Wine grape | cytosol | 36.96 | 29.69 |
| VIT_07s0197g00040.t01 | Wine grape | cytosol, nucleus, plastid | 46.2 | 28.43 |
Protein Annotations
| ArrayExpress:VIT_17s0000g09010 | EMBL:FN594950 | EnsemblPlants:VIT_17s0000g09010.t01 | EnsemblPlantsGene:VIT_17s0000g09010 | EntrezGene:100267218 | EntrezGene:LOC100267218 |
| InterPro:IPR004883 | InterPro:LOB | ncoils:Coil | PANTHER:PTHR31301 | PANTHER:PTHR31301:SF12 | PFAM:PF03195 |
| PFscan:PS50891 | ProteinID:CCB42953 | ProteinID:CCB42953.1 | RefSeq:XP_002281358 | RefSeq:XP_002281358.1 | SEG:seg |
| UniParc:UPI0002108098 | UniProt:F6GSI8 | wikigene:100267218 | wikigene:LOC100267218 | MapMan:15.5.24 | : |
Description
No Description!
Coordinates
chr17:-:10578569..10581033
Molecular Weight (calculated)
20005.5 Da
IEP (calculated)
7.301
GRAVY (calculated)
-0.482
Length
184 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSSSYNSP CAACKFLRRK CMPGCIFAPY FPPEEPQKFA NVHKIFGASN VTKLLNELLP HQREDAVNSL AYEAEARVRD PVYGCVGAIS FLQRQVERLQ
101: KELDAANADL IRYACNEMSS QLPSPSLVRS TSRRIGNEGG GSYFQNPGYS HPYSLPWDDN PSGNMNESGG GGGGGSMTTT LLSQ
101: KELDAANADL IRYACNEMSS QLPSPSLVRS TSRRIGNEGG GSYFQNPGYS HPYSLPWDDN PSGNMNESGG GGGGGSMTTT LLSQ
001: MASSSNSYNS PCAACKFLRR KCMPGCIFAP YFPPEEPHKF ANVHKIFGAS NVTKLLNELL PHQREDAVNS LAYEAEARVR DPVYGCVGAI SYLQRQVHRL
101: QKELDAANAD LAHYGLSTSA AGAPGNVVDL VFQPQPLPSQ QLPPLNPVYR LSGASPVMNQ MPRGTGGSYG TFLPWNNGHD QQGGNM
101: QKELDAANAD LAHYGLSTSA AGAPGNVVDL VFQPQPLPSQ QLPPLNPVYR LSGASPVMNQ MPRGTGGSYG TFLPWNNGHD QQGGNM
Arabidopsis Description
LOBLOB [Source:UniProtKB/TrEMBL;Acc:A0A178UKE6]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.