Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_13s0067g02380.t01 | Wine grape | nucleus | 72.05 | 73.66 |
| GSMUA_Achr11P... | Banana | cytosol | 63.76 | 67.28 |
| GSMUA_Achr5P07460_001 | Banana | nucleus | 60.7 | 66.51 |
| Solyc06g082430.1.1 | Tomato | cytosol, nucleus, plastid | 66.81 | 65.95 |
| PGSC0003DMT400078265 | Potato | cytosol, nucleus, plastid | 62.88 | 64.86 |
| Bra000188.1-P | Field mustard | plastid | 55.9 | 64.32 |
| CDX93178 | Canola | cytosol, nucleus, plastid | 63.76 | 64.32 |
| AT2G40470.1 | Thale cress | cytosol, nucleus, plastid | 62.88 | 64.29 |
| GSMUA_Achr7P22200_001 | Banana | nucleus | 58.95 | 63.98 |
| Bra004572.1-P | Field mustard | cytosol, mitochondrion, nucleus | 62.01 | 63.68 |
| CDY23903 | Canola | plastid | 55.02 | 63.64 |
| CDY67958 | Canola | plastid | 55.02 | 63.64 |
| HORVU1Hr1G024490.1 | Barley | cytosol, mitochondrion, nucleus | 45.85 | 63.25 |
| GSMUA_AchrUn_... | Banana | plastid | 49.78 | 61.96 |
| CDY06988 | Canola | plastid | 54.15 | 61.69 |
| Bra016992.1-P | Field mustard | plastid | 54.15 | 61.69 |
| KRH17149 | Soybean | cytosol, mitochondrion, nucleus | 66.38 | 61.04 |
| KRH72805 | Soybean | cytosol, mitochondrion, nucleus | 67.25 | 60.87 |
| CDY24903 | Canola | mitochondrion | 59.83 | 59.31 |
| CDY07604 | Canola | mitochondrion | 59.83 | 59.05 |
| PGSC0003DMT400052995 | Potato | plastid | 51.09 | 58.21 |
| Solyc06g007390.2.1 | Tomato | nucleus | 60.26 | 57.98 |
| TraesCS1D01G113100.1 | Wheat | nucleus | 54.59 | 53.19 |
| Zm00001d043036_P001 | Maize | cytosol | 54.59 | 52.74 |
| TraesCS1B01G131900.2 | Wheat | nucleus | 54.15 | 52.32 |
| TraesCS1A01G111700.1 | Wheat | nucleus | 53.71 | 51.9 |
| TraesCS3D01G340000.1 | Wheat | cytosol | 55.46 | 51.21 |
| Zm00001d009823_P001 | Maize | plastid | 48.91 | 51.14 |
| OQU87769 | Sorghum | cytosol | 55.46 | 51.0 |
| TraesCS3A01G346300.1 | Wheat | cytosol | 55.02 | 50.4 |
| Os01t0825000-01 | Rice | cytosol | 54.15 | 49.4 |
| Os05t0165450-00 | Rice | extracellular | 53.28 | 49.19 |
| VIT_06s0004g07200.t01 | Wine grape | mitochondrion, nucleus | 34.5 | 48.47 |
| VIT_19s0027g01120.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 34.93 | 47.06 |
| VIT_00s0125g00290.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 34.93 | 45.71 |
| VIT_13s0067g01880.t01 | Wine grape | mitochondrion | 34.06 | 45.61 |
| VIT_13s0019g03760.t01 | Wine grape | plastid | 27.07 | 45.26 |
| TraesCS3B01G378100.1 | Wheat | plastid | 54.15 | 42.47 |
| OQU77508 | Sorghum | cytosol, nucleus, plastid | 55.9 | 41.69 |
| VIT_13s0019g03720.t01 | Wine grape | nucleus, plastid | 28.38 | 40.12 |
| VIT_14s0066g00680.t01 | Wine grape | nucleus, plastid | 29.69 | 40.0 |
| VIT_13s0019g03710.t01 | Wine grape | nucleus, plastid | 28.38 | 39.39 |
| HORVU3Hr1G088440.1 | Barley | plastid | 55.46 | 38.48 |
| VIT_17s0000g09010.t01 | Wine grape | plastid | 29.69 | 36.96 |
| VIT_13s0019g03750.t01 | Wine grape | plastid | 27.51 | 36.21 |
| VIT_13s0019g03780.t01 | Wine grape | plastid | 27.07 | 35.84 |
| VIT_06s0004g03350.t01 | Wine grape | plastid | 31.0 | 34.8 |
| VIT_06s0004g03330.t01 | Wine grape | nucleus, plastid | 29.26 | 33.17 |
| VIT_13s0019g03700.t01 | Wine grape | plastid | 28.38 | 32.99 |
| VIT_00s0340g00090.t01 | Wine grape | nucleus | 30.57 | 32.41 |
| VIT_00s1247g00010.t01 | Wine grape | nucleus | 29.26 | 27.8 |
| VIT_07s0197g00030.t01 | Wine grape | nucleus | 29.69 | 27.76 |
| VIT_07s0197g00020.t01 | Wine grape | nucleus | 30.13 | 23.63 |
| VIT_16s0022g02050.t01 | Wine grape | cytosol, mitochondrion, nucleus | 28.82 | 23.0 |
| VIT_07s0197g00040.t01 | Wine grape | cytosol, nucleus, plastid | 27.95 | 21.4 |
Protein Annotations
| EntrezGene:100262112 | wikigene:100262112 | MapMan:15.5.24 | ProteinID:CBI15842 | ProteinID:CBI15842.3 | ncoils:Coil |
| UniProt:D7SJL6 | EMBL:FN594951 | InterPro:IPR004883 | InterPro:LOB | EntrezGene:LOC100262112 | wikigene:LOC100262112 |
| PFAM:PF03195 | PFscan:PS50891 | PANTHER:PTHR31301 | PANTHER:PTHR31301:SF28 | UniParc:UPI0001983735 | ArrayExpress:VIT_06s0004g07790 |
| EnsemblPlantsGene:VIT_06s0004g07790 | EnsemblPlants:VIT_06s0004g07790.t01 | unigene:Vvi.19954 | RefSeq:XP_002269676 | RefSeq:XP_002269676.1 | SEG:seg |
Description
No Description!
Coordinates
chr6:-:8584641..8585814
Molecular Weight (calculated)
24922.7 Da
IEP (calculated)
8.478
GRAVY (calculated)
-0.278
Length
229 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRERERLFD EVGKKIKRET DHKSSHMGRR QLLGPPGTLN TITPCAACKL LRRRCAEECP FSPYFSPHEP HKFAAVHKVF GASNVSKMLM DVAENQRADA
101: VNSLVFEANL RLRDPVYGCM GAISALQHQV HSLQTELNAV KAEILKYKYR EAASTIISSS HAALVSSESD SISAVSLPSS LPPPPLPLPP PTPSVVSSSP
201: PSASSLYTIL PSSTTGYSSI TSDNIPYFD
101: VNSLVFEANL RLRDPVYGCM GAISALQHQV HSLQTELNAV KAEILKYKYR EAASTIISSS HAALVSSESD SISAVSLPSS LPPPPLPLPP PTPSVVSSSP
201: PSASSLYTIL PSSTTGYSSI TSDNIPYFD
001: MSRERERFEE IGKKIKREAD AWPHQMAGIR RPMSGPPGTL NTITPCAACK LLRRRCAQEC PFSPYFSPHE PHKFASVHKV FGASNVSKML MEVPESQRAD
101: AANSLVYEAN VRLRDPVYGC MGAISALQQQ VQALQAELTA VRSEILKYKQ REAVATLIVP SNSQVAGFHN SGGVSVIAPP PQRPTTPPQP TTAHPPSPSS
201: CVFSQPTTRD LEYGNIESEN NYFG
101: AANSLVYEAN VRLRDPVYGC MGAISALQQQ VQALQAELTA VRSEILKYKQ REAVATLIVP SNSQVAGFHN SGGVSVIAPP PQRPTTPPQP TTAHPPSPSS
201: CVFSQPTTRD LEYGNIESEN NYFG
Arabidopsis Description
LBD15LOB domain-containing protein 15 [Source:UniProtKB/Swiss-Prot;Acc:Q8L5T5]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.