Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- mitochondrion 4
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000188.1-P | Field mustard | plastid | 85.78 | 100.0 |
| CDY24903 | Canola | mitochondrion | 95.69 | 96.1 |
| CDY06988 | Canola | plastid | 79.31 | 91.54 |
| CDY67958 | Canola | plastid | 77.16 | 90.4 |
| CDY23903 | Canola | plastid | 77.16 | 90.4 |
| AT2G40470.1 | Thale cress | cytosol, nucleus, plastid | 87.07 | 90.18 |
| CDX93178 | Canola | cytosol, nucleus, plastid | 86.64 | 88.55 |
| VIT_13s0067g02380.t01 | Wine grape | nucleus | 67.24 | 69.64 |
| KRH53776 | Soybean | nucleus | 65.52 | 68.47 |
| KRH64170 | Soybean | nucleus | 65.09 | 68.02 |
| Solyc06g050430.2.1 | Tomato | nucleus | 61.64 | 65.9 |
| VIT_06s0004g07790.t01 | Wine grape | cytosol | 59.05 | 59.83 |
| CDY72536 | Canola | mitochondrion | 33.62 | 56.52 |
| CDY51008 | Canola | mitochondrion | 33.19 | 55.4 |
| KRH17149 | Soybean | cytosol, mitochondrion, nucleus | 57.76 | 53.82 |
| KRH72805 | Soybean | cytosol, mitochondrion, nucleus | 58.19 | 53.36 |
| CDY02059 | Canola | mitochondrion | 53.45 | 52.54 |
| CDX83724 | Canola | plastid | 29.74 | 52.27 |
| CDY13730 | Canola | plastid | 29.74 | 52.27 |
| CDY10726 | Canola | mitochondrion | 53.02 | 52.12 |
| CDY20041 | Canola | plastid | 28.45 | 50.38 |
| CDY03987 | Canola | plastid | 28.45 | 50.0 |
| CDY49773 | Canola | plastid | 28.45 | 50.0 |
| PGSC0003DMT400074783 | Potato | mitochondrion | 55.17 | 46.72 |
| CDX77553 | Canola | cytosol, mitochondrion, nucleus, plastid | 33.19 | 44.77 |
| CDY50718 | Canola | cytosol, mitochondrion, nucleus, plastid | 32.76 | 44.19 |
| CDY10714 | Canola | mitochondrion | 34.91 | 42.86 |
| CDY24027 | Canola | mitochondrion | 34.48 | 42.55 |
| CDY40054 | Canola | mitochondrion | 29.31 | 41.72 |
| CDX81767 | Canola | cytosol, nucleus, plastid | 29.31 | 41.46 |
| CDY66794 | Canola | mitochondrion | 28.88 | 41.1 |
| CDY16738 | Canola | plastid | 31.03 | 40.91 |
| CDY48125 | Canola | plastid | 31.03 | 40.91 |
| CDY50999 | Canola | cytosol, mitochondrion, plastid | 28.88 | 40.85 |
| CDY69697 | Canola | plastid | 30.6 | 39.23 |
| CDY68853 | Canola | plastid | 30.6 | 39.23 |
| CDY06285 | Canola | nucleus, plastid | 28.45 | 34.74 |
| CDY16414 | Canola | nucleus, plastid | 30.17 | 34.65 |
| CDY46781 | Canola | nucleus, plastid | 30.17 | 34.65 |
| CDY22713 | Canola | plastid | 28.45 | 34.55 |
| CDY04570 | Canola | plastid | 30.17 | 32.11 |
| CDY15755 | Canola | plastid | 29.31 | 31.34 |
| CDY62454 | Canola | plastid | 28.88 | 30.88 |
| CDX77182 | Canola | plastid | 28.88 | 30.88 |
| CDY31207 | Canola | plastid | 28.02 | 30.09 |
| CDX93609 | Canola | nucleus | 28.02 | 28.89 |
| CDX95115 | Canola | plastid | 27.59 | 28.07 |
| CDX83290 | Canola | plastid | 27.59 | 27.71 |
| CDY49845 | Canola | nucleus, plastid | 30.6 | 22.76 |
| CDY52150 | Canola | nucleus, plastid | 30.6 | 22.47 |
| CDX68120 | Canola | mitochondrion, nucleus | 29.31 | 22.08 |
| CDX89590 | Canola | mitochondrion, nucleus | 29.31 | 22.08 |
| CDY12784 | Canola | nucleus, plastid | 29.31 | 20.24 |
| CDY01457 | Canola | nucleus, plastid | 29.31 | 20.12 |
| CDX81360 | Canola | plastid | 28.02 | 19.4 |
| CDY18621 | Canola | nucleus, plastid | 25.0 | 19.14 |
Protein Annotations
| EnsemblPlants:CDY07604 | EnsemblPlantsGene:GSBRNA2T00124701001 | InterPro:IPR004883 | InterPro:LOB | ncoils:Coil | PANTHER:PTHR31301 |
| PANTHER:PTHR31301:SF2 | PFAM:PF03195 | PFscan:PS50891 | ProteinID:CDY07604 | ProteinID:CDY07604.1 | SEG:seg |
| UniParc:UPI0004EDCEDB | UniProt:A0A078F3M7 | MapMan:15.5.24 | : | : | : |
Description
BnaA03g19070DBnaA03g19070D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F3M7]
Coordinates
chrLK031980:+:26260..27324
Molecular Weight (calculated)
25494.7 Da
IEP (calculated)
9.493
GRAVY (calculated)
-0.257
Length
232 amino acids
Sequence
(BLAST)
(BLAST)
001: MKTKVLLGFV VLRERFELLR KIFKREADAW PHQMAGIRRP MSGPPGTLNT ITPCAACKLL RRRCAQECPF SPYFSPHEPH KFASVHKVFG ASNVSKMLME
101: VPESQRADAA NSLVYEANVR LRDPVYGCMG AISALQQQVQ ALQSELTAVR SAILKYKQRE AVATLILPSN SQVAGFHNSS GVSVIAPPPQ TPSTPPQPTV
201: APPPPSSCVF SQPTTRALEY SDIENENNSY FG
101: VPESQRADAA NSLVYEANVR LRDPVYGCMG AISALQQQVQ ALQSELTAVR SAILKYKQRE AVATLILPSN SQVAGFHNSS GVSVIAPPPQ TPSTPPQPTV
201: APPPPSSCVF SQPTTRALEY SDIENENNSY FG
001: MSRERERFEE IGKKIKREAD AWPHQMAGIR RPMSGPPGTL NTITPCAACK LLRRRCAQEC PFSPYFSPHE PHKFASVHKV FGASNVSKML MEVPESQRAD
101: AANSLVYEAN VRLRDPVYGC MGAISALQQQ VQALQAELTA VRSEILKYKQ REAVATLIVP SNSQVAGFHN SGGVSVIAPP PQRPTTPPQP TTAHPPSPSS
201: CVFSQPTTRD LEYGNIESEN NYFG
101: AANSLVYEAN VRLRDPVYGC MGAISALQQQ VQALQAELTA VRSEILKYKQ REAVATLIVP SNSQVAGFHN SGGVSVIAPP PQRPTTPPQP TTAHPPSPSS
201: CVFSQPTTRD LEYGNIESEN NYFG
Arabidopsis Description
LBD15LOB domain-containing protein 15 [Source:UniProtKB/Swiss-Prot;Acc:Q8L5T5]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.