CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22713	Canola	plastid	97.37	96.86
Bra031599.1-P	Field mustard	nucleus, plastid	99.47	91.3
AT1G07900.1	Thale cress	plastid	77.89	77.89
CDX93609	Canola	nucleus	84.74	71.56
CDX95115	Canola	plastid	83.16	69.3
CDX77182	Canola	plastid	73.16	64.06
CDY62454	Canola	plastid	72.63	63.59
CDY15755	Canola	plastid	70.53	61.75
CDY31207	Canola	plastid	70.0	61.57
Solyc04g050010.1.1	Tomato	cytosol	53.16	61.21
CDY04570	Canola	plastid	69.47	60.55
KRH10407	Soybean	mitochondrion	54.21	59.88
PGSC0003DMT400010597	Potato	cytosol, nucleus, plastid	53.68	58.96
CDX83290	Canola	plastid	70.0	57.58
VIT_13s0019g03700.t01	Wine grape	plastid	58.42	56.35
Solyc11g072470.1.1	Tomato	plastid	55.79	56.08
KRH24932	Soybean	nucleus, plastid	59.47	55.94
KRH22937	Soybean	plastid	57.89	55.56
KRG89044	Soybean	nucleus, plastid	58.95	54.9
VIT_06s0004g03330.t01	Wine grape	nucleus, plastid	57.89	54.46
VIT_06s0004g03350.t01	Wine grape	plastid	57.89	53.92
CDY72536	Canola	mitochondrion	38.95	53.62
CDY51008	Canola	mitochondrion	38.95	53.24
GSMUA_Achr6P33070_001	Banana	plastid	54.74	53.06
Solyc06g005090.2.1	Tomato	plastid	54.74	52.53
Solyc05g048740.2.1	Tomato	nucleus, plastid	58.42	51.63
CDY13730	Canola	plastid	35.79	51.52
CDX83724	Canola	plastid	35.79	51.52
CDY20041	Canola	plastid	34.21	49.62
KRH34918	Soybean	plastid	57.89	49.55
KRG91848	Soybean	plastid	57.89	49.55
PGSC0003DMT400019410	Potato	plastid	51.58	49.49
CDY03987	Canola	plastid	34.21	49.24
PGSC0003DMT400065346	Potato	plastid	53.68	48.8
CDY49773	Canola	plastid	33.68	48.48
GSMUA_Achr9P04330_001	Banana	plastid	45.26	48.31
TraesCS1A01G062200.1	Wheat	cytosol, plastid	49.47	45.63
PGSC0003DMT400065297	Potato	plastid	51.05	44.91
Zm00001d035498_P001	Maize	plastid	51.05	43.89
TraesCS2D01G008400.1	Wheat	plastid	49.47	43.72
HORVU1Hr1G012720.1	Barley	cytosol, plastid	49.47	43.72
TraesCS1B01G080600.1	Wheat	cytosol, plastid	49.47	43.72
Zm00001d010978_P001	Maize	plastid	47.89	42.92
EES18939	Sorghum	plastid	49.47	42.92
CDX81767	Canola	cytosol, nucleus, plastid	36.32	42.07
CDX77553	Canola	cytosol, mitochondrion, nucleus, plastid	37.89	41.86
CDY66794	Canola	mitochondrion	35.79	41.72
CDY40054	Canola	mitochondrion	35.79	41.72
EER92422	Sorghum	plastid	51.58	41.7
CDY50718	Canola	cytosol, mitochondrion, nucleus, plastid	37.37	41.28
TraesCS4B01G197100.1	Wheat	plastid	48.42	41.26
TraesCS4D01G197400.1	Wheat	plastid	48.42	41.26
HORVU4Hr1G056890.2	Barley	plastid	48.42	41.07
Zm00001d028721_P001	Maize	plastid	50.53	40.85
Zm00001d047752_P001	Maize	plastid	51.05	40.59
TraesCS4A01G107300.1	Wheat	plastid	47.37	40.36
CDY16738	Canola	plastid	36.84	39.77
CDY48125	Canola	plastid	36.84	39.77
CDY50999	Canola	cytosol, mitochondrion, plastid	34.21	39.63
CDY24027	Canola	mitochondrion	38.95	39.36
CDY10714	Canola	mitochondrion	38.95	39.15
CDY68853	Canola	plastid	36.84	38.67
CDY69697	Canola	plastid	36.84	38.67
Os03t0287400-01	Rice	plastid	48.42	38.49
Solyc06g075330.1.1	Tomato	golgi, nucleus, plastid	44.74	35.12
CDY46781	Canola	nucleus, plastid	35.79	33.66
CDY16414	Canola	nucleus, plastid	35.79	33.66
CDY23903	Canola	plastid	34.74	33.33
CDY67958	Canola	plastid	34.74	33.33
CDY06988	Canola	plastid	34.74	32.84
CDX93178	Canola	cytosol, nucleus, plastid	35.79	29.96
CDY24903	Canola	mitochondrion	35.26	29.0
CDY07604	Canola	mitochondrion	34.74	28.45
CDY10726	Canola	mitochondrion	31.58	25.42
CDY02059	Canola	mitochondrion	31.58	25.42
CDX89590	Canola	mitochondrion, nucleus	37.89	23.38
CDX68120	Canola	mitochondrion, nucleus	37.89	23.38
CDY49845	Canola	nucleus, plastid	35.79	21.79
CDY52150	Canola	nucleus, plastid	35.26	21.2
CDY12784	Canola	nucleus, plastid	36.84	20.83
CDY01457	Canola	nucleus, plastid	36.84	20.71
CDY18621	Canola	nucleus, plastid	32.11	20.13
CDX81360	Canola	plastid	33.16	18.81

Protein Annotations

EnsemblPlants:CDY06285	EnsemblPlantsGene:GSBRNA2T00122208001	InterPro:IPR004883	InterPro:LOB	ncoils:Coil	PANTHER:PTHR31301
PANTHER:PTHR31301:SF6	PFAM:PF03195	PFscan:PS50891	ProteinID:CDY06285	ProteinID:CDY06285.1	SEG:seg
UniParc:UPI0004EDCA77	MapMan:15.5.24	:	:	:	:

Description

BnaA09g49180D

Coordinates

chrLK031968:+:632524..633641

Molecular Weight (calculated)

21296.7 Da

IEP (calculated)

5.819

GRAVY (calculated)

-0.214

Length

190 amino acids

Sequence
(BLAST)

001: MPDMESKGDA SAAIIYASPA SSPPPPRVVL SPCAACKILR RRCGEKCVLA PYFPPTEPAK FSIAHRVFGA SNIIKLLQEL PESQRIDAVK SLVYEAEARI
101: RDPVYGSTGA IYNLQRQVSE LQAELAKAQV EIVSMQFQRS NLLELINNMD QPNQDQHKMM AFEKSNDFGF LEDKYFNTNS LMLWCDPLLI

Best Arabidopsis Sequence Match ( AT1G07900.1 )
(BLAST)

001: MESKSDASVA TTPIISSSSS PPPSLSPRVV LSPCAACKIL RRRCAERCVL APYFPPTDPA KFTIAHRVFG ASNIIKFLQE LPESQRTDAV NSMVYEAEAR
101: IRDPVYGCAG AIYHLQRQVS ELQAQLAKAQ VEMVNMQFQR SNLLELIYNM DQQQKQEQDN MSFESNDLGF LEDKSNTNSS MLWWDPLWTC

Arabidopsis Description

LBD1LBD1 [Source:UniProtKB/TrEMBL;Acc:A0A178WM56]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.