Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G66870.1 | CDX74943 | AT2G37630.1 | 16243907 |
| AT5G66870.1 | CDX79747 | AT2G37630.1 | 16243907 |
| AT5G66870.1 | CDX91374 | AT2G37630.1 | 16243907 |
| AT5G66870.1 | CDY07778 | AT2G37630.1 | 16243907 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY52150 | Canola | nucleus, plastid | 96.47 | 95.25 |
| AT5G66870.1 | Thale cress | nucleus | 79.49 | 79.23 |
| CDY01457 | Canola | nucleus, plastid | 83.01 | 76.63 |
| CDY12784 | Canola | nucleus, plastid | 82.05 | 76.19 |
| CDY20041 | Canola | plastid | 25.0 | 59.54 |
| CDY13730 | Canola | plastid | 25.0 | 59.09 |
| CDY49773 | Canola | plastid | 25.0 | 59.09 |
| CDY03987 | Canola | plastid | 25.0 | 59.09 |
| CDX83724 | Canola | plastid | 24.68 | 58.33 |
| VIT_00s1247g00010.t01 | Wine grape | nucleus | 43.91 | 56.85 |
| VIT_07s0197g00030.t01 | Wine grape | nucleus | 42.63 | 54.29 |
| KRH62409 | Soybean | nucleus | 36.54 | 53.77 |
| CDY72536 | Canola | mitochondrion | 23.08 | 52.17 |
| CDY51008 | Canola | mitochondrion | 22.76 | 51.08 |
| KRH53127 | Soybean | nucleus | 33.01 | 50.49 |
| Solyc02g065150.1.1 | Tomato | nucleus | 46.79 | 50.17 |
| CDY16738 | Canola | plastid | 28.21 | 50.0 |
| PGSC0003DMT400002013 | Potato | nucleus | 45.83 | 49.83 |
| PGSC0003DMT400002011 | Potato | nucleus | 45.51 | 49.31 |
| VIT_16s0022g02050.t01 | Wine grape | cytosol, mitochondrion, nucleus | 45.19 | 49.13 |
| CDY48125 | Canola | plastid | 27.56 | 48.86 |
| CDY69697 | Canola | plastid | 27.88 | 48.07 |
| CDY68853 | Canola | plastid | 27.88 | 48.07 |
| VIT_07s0197g00020.t01 | Wine grape | nucleus | 44.55 | 47.6 |
| VIT_07s0197g00040.t01 | Wine grape | cytosol, nucleus, plastid | 45.19 | 47.16 |
| KRH28509 | Soybean | nucleus | 43.59 | 44.16 |
| PGSC0003DMT400025959 | Potato | nucleus | 44.23 | 44.09 |
| KRH76950 | Soybean | nucleus | 42.95 | 44.08 |
| CDY16414 | Canola | nucleus, plastid | 28.53 | 44.06 |
| CDY46781 | Canola | nucleus, plastid | 28.53 | 44.06 |
| Solyc02g090410.2.1 | Tomato | mitochondrion, plastid | 44.23 | 43.81 |
| CDY40054 | Canola | mitochondrion | 22.76 | 43.56 |
| CDY66794 | Canola | mitochondrion | 22.76 | 43.56 |
| CDX81767 | Canola | cytosol, nucleus, plastid | 22.44 | 42.68 |
| CDY50999 | Canola | cytosol, mitochondrion, plastid | 22.12 | 42.07 |
| KRH57745 | Soybean | nucleus | 36.86 | 41.67 |
| CDY10714 | Canola | mitochondrion | 25.0 | 41.27 |
| GSMUA_Achr6P04670_001 | Banana | mitochondrion | 37.5 | 40.62 |
| CDY50718 | Canola | cytosol, mitochondrion, nucleus, plastid | 22.12 | 40.12 |
| CDX77553 | Canola | cytosol, mitochondrion, nucleus, plastid | 22.12 | 40.12 |
| CDY24027 | Canola | mitochondrion | 24.04 | 39.89 |
| CDX81360 | Canola | plastid | 42.31 | 39.4 |
| CDX68120 | Canola | mitochondrion, nucleus | 37.18 | 37.66 |
| CDX89590 | Canola | mitochondrion, nucleus | 37.18 | 37.66 |
| CDY18621 | Canola | nucleus, plastid | 36.54 | 37.62 |
| TraesCS4D01G078800.1 | Wheat | mitochondrion, nucleus, plastid | 33.97 | 37.32 |
| TraesCS4B01G079900.1 | Wheat | mitochondrion, nucleus, plastid | 33.97 | 37.32 |
| TraesCS4A01G235100.1 | Wheat | nucleus | 33.97 | 36.81 |
| CDY06285 | Canola | nucleus, plastid | 21.79 | 35.79 |
| CDY06988 | Canola | plastid | 22.76 | 35.32 |
| Zm00001d033335_P001 | Maize | plastid | 31.73 | 35.23 |
| HORVU4Hr1G013630.2 | Barley | nucleus | 33.97 | 35.22 |
| CDY22713 | Canola | plastid | 21.47 | 35.08 |
| CDY67958 | Canola | plastid | 22.12 | 34.85 |
| CDY23903 | Canola | plastid | 22.12 | 34.85 |
| Zm00001d013732_P001 | Maize | plastid | 33.33 | 34.78 |
| EER93817 | Sorghum | plastid | 33.01 | 34.68 |
| CDX93178 | Canola | cytosol, nucleus, plastid | 23.72 | 32.6 |
| GSMUA_Achr2P17160_001 | Banana | mitochondrion | 31.41 | 32.56 |
| CDY07604 | Canola | mitochondrion | 22.76 | 30.6 |
| CDY24903 | Canola | mitochondrion | 22.44 | 30.3 |
| CDY04570 | Canola | plastid | 21.15 | 30.28 |
| CDY15755 | Canola | plastid | 20.51 | 29.49 |
| CDY62454 | Canola | plastid | 20.51 | 29.49 |
| CDX95115 | Canola | plastid | 21.47 | 29.39 |
| CDX93609 | Canola | nucleus | 21.15 | 29.33 |
| CDY31207 | Canola | plastid | 20.19 | 29.17 |
| CDX77182 | Canola | plastid | 20.19 | 29.03 |
| CDX83290 | Canola | plastid | 20.51 | 27.71 |
| CDY02059 | Canola | mitochondrion | 20.51 | 27.12 |
| CDY10726 | Canola | mitochondrion | 20.51 | 27.12 |
| Os03t0612400-00 | Rice | cytosol, nucleus | 34.29 | 26.95 |
Protein Annotations
| EnsemblPlants:CDY49845 | EnsemblPlantsGene:GSBRNA2T00093916001 | InterPro:IPR004883 | InterPro:LOB | InterPro:LOBD | ncoils:Coil |
| PANTHER:PTHR31301 | PANTHER:PTHR31301:SF22 | PFAM:PF03195 | PFscan:PS50891 | PIRSF:PIRSF038155 | ProteinID:CDY49845 |
| ProteinID:CDY49845.1 | SEG:seg | UniParc:UPI0004EB9257 | UniProt:A0A078IG08 | MapMan:15.5.24 | : |
Description
BnaC02g44040DBnaC02g44040D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IG08]
Coordinates
chrLK032863:+:45418..46356
Molecular Weight (calculated)
34405.2 Da
IEP (calculated)
7.747
GRAVY (calculated)
-0.571
Length
312 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSSSSSPC AACKFLRRKC TQECVFAPYF PPDQPHKFAY VHKIFGASNV AKLLNDLASN QREDAVNSLF YEAEARLRDP VYGCVGLISI LQHRLKQLQH
101: DLDNAKKELA AYAAPNAMLP MHHPQPHFMS LPPQPQRPSS ASSSASVLTQ QQQHHNLLPV LAIPTEQLLY HQQHIFEAQQ LAAVNSVSRD QLNEMFRAYG
201: GGSNSPHHHH NQPQFDILRF NSGFGSVPTG SVTVTGFNQL SSSGTTITGM SPSLALGDSF VDSPSTNDNY HRDQQLQHQQ SSQPLPLQTQ ETQTRPNSKS
301: EEGRGNIIGS SR
101: DLDNAKKELA AYAAPNAMLP MHHPQPHFMS LPPQPQRPSS ASSSASVLTQ QQQHHNLLPV LAIPTEQLLY HQQHIFEAQQ LAAVNSVSRD QLNEMFRAYG
201: GGSNSPHHHH NQPQFDILRF NSGFGSVPTG SVTVTGFNQL SSSGTTITGM SPSLALGDSF VDSPSTNDNY HRDQQLQHQQ SSQPLPLQTQ ETQTRPNSKS
301: EEGRGNIIGS SR
001: MASSSSPCAA CKFLRRKCTQ ECVFAPYFPP DQPQKFAFVH KVFGASNVAK LLNELASNQR EDAVNSLFYE AEARLRDPVY GCVGLISILQ HRLKQVNHDL
101: ENAKKELATY VGPQAMLPIL QPHFMSLPPQ PQRPSSSSAS VLTQHHHNLL PMMAIPTGQL YHQQQQQIFE AQQLAAVARE QQNEMFRAYG GGGGSSSPHH
201: QNQAQAEILR FNNGFDSVPA GSVTVTGFNQ LSSGGTAVTG MSLGGNFVDS PSTNNNYHTD QQLHHHHQPQ QHHEAQLFIP SQSSQPLPLQ TQETQTQTQP
301: NSESEEGRRN VIG
101: ENAKKELATY VGPQAMLPIL QPHFMSLPPQ PQRPSSSSAS VLTQHHHNLL PMMAIPTGQL YHQQQQQIFE AQQLAAVARE QQNEMFRAYG GGGGSSSPHH
201: QNQAQAEILR FNNGFDSVPA GSVTVTGFNQ LSSGGTAVTG MSLGGNFVDS PSTNNNYHTD QQLHHHHQPQ QHHEAQLFIP SQSSQPLPLQ TQETQTQTQP
301: NSESEEGRRN VIG
Arabidopsis Description
LBD36LOB domain-containing protein 36 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKZ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.