Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_08s0007g00410.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G66870.1 | VIT_08s0007g00410.t01 | AT2G37630.1 | 16243907 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_07s0197g00020.t01 | Wine grape | nucleus | 98.34 | 81.16 |
| VIT_07s0197g00030.t01 | Wine grape | nucleus | 76.76 | 75.51 |
| VIT_16s0022g02050.t01 | Wine grape | cytosol, mitochondrion, nucleus | 75.52 | 63.41 |
| VIT_07s0197g00040.t01 | Wine grape | cytosol, nucleus, plastid | 78.01 | 62.88 |
| Solyc02g065150.1.1 | Tomato | nucleus | 68.46 | 56.7 |
| PGSC0003DMT400002013 | Potato | nucleus | 66.39 | 55.75 |
| PGSC0003DMT400002011 | Potato | nucleus | 65.15 | 54.51 |
| KRH62409 | Soybean | nucleus | 47.3 | 53.77 |
| PGSC0003DMT400025959 | Potato | nucleus | 69.29 | 53.35 |
| Solyc02g090410.2.1 | Tomato | mitochondrion, plastid | 69.29 | 53.02 |
| KRH53127 | Soybean | nucleus | 44.81 | 52.94 |
| KRH76950 | Soybean | nucleus | 61.41 | 48.68 |
| VIT_17s0000g09010.t01 | Wine grape | plastid | 36.51 | 47.83 |
| KRH28509 | Soybean | nucleus | 60.58 | 47.4 |
| VIT_06s0004g07200.t01 | Wine grape | mitochondrion, nucleus | 31.95 | 47.24 |
| VIT_14s0066g00680.t01 | Wine grape | nucleus, plastid | 32.78 | 46.47 |
| AT5G66870.1 | Thale cress | nucleus | 60.17 | 46.33 |
| VIT_00s0125g00290.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 32.78 | 45.14 |
| CDY49845 | Canola | nucleus, plastid | 56.85 | 43.91 |
| KRH57745 | Soybean | nucleus | 50.21 | 43.84 |
| VIT_13s0067g01880.t01 | Wine grape | mitochondrion | 30.71 | 43.27 |
| VIT_13s0019g03760.t01 | Wine grape | plastid | 24.48 | 43.07 |
| VIT_19s0027g01120.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 30.29 | 42.94 |
| CDY52150 | Canola | nucleus, plastid | 56.02 | 42.72 |
| CDY12784 | Canola | nucleus, plastid | 59.34 | 42.56 |
| Bra012112.1-P | Field mustard | nucleus, plastid | 59.34 | 42.31 |
| CDY01457 | Canola | nucleus, plastid | 59.34 | 42.31 |
| TraesCS4B01G079900.1 | Wheat | mitochondrion, nucleus, plastid | 49.79 | 42.25 |
| VIT_00s0340g00090.t01 | Wine grape | nucleus | 37.76 | 42.13 |
| GSMUA_Achr6P04670_001 | Banana | mitochondrion | 50.21 | 42.01 |
| TraesCS4D01G078800.1 | Wheat | mitochondrion, nucleus, plastid | 49.38 | 41.9 |
| TraesCS4A01G235100.1 | Wheat | nucleus | 48.96 | 40.97 |
| HORVU4Hr1G013630.2 | Barley | nucleus | 50.21 | 40.2 |
| Zm00001d033335_P001 | Maize | plastid | 46.47 | 39.86 |
| EER93817 | Sorghum | plastid | 48.55 | 39.39 |
| Zm00001d013732_P001 | Maize | plastid | 47.3 | 38.13 |
| CDX89590 | Canola | mitochondrion, nucleus | 47.3 | 37.01 |
| CDX68120 | Canola | mitochondrion, nucleus | 47.3 | 37.01 |
| Bra032153.1-P | Field mustard | mitochondrion, nucleus | 47.3 | 37.01 |
| CDY18621 | Canola | nucleus, plastid | 46.06 | 36.63 |
| AT2G23660.2 | Thale cress | mitochondrion, nucleus | 46.89 | 36.33 |
| VIT_13s0019g03750.t01 | Wine grape | plastid | 26.14 | 36.21 |
| VIT_13s0019g03710.t01 | Wine grape | nucleus, plastid | 24.48 | 35.76 |
| CDX81360 | Canola | plastid | 49.38 | 35.52 |
| VIT_13s0019g03780.t01 | Wine grape | plastid | 25.31 | 35.26 |
| VIT_13s0019g03720.t01 | Wine grape | nucleus, plastid | 23.65 | 35.19 |
| GSMUA_Achr2P17160_001 | Banana | mitochondrion | 43.15 | 34.55 |
| VIT_13s0067g02380.t01 | Wine grape | nucleus | 30.71 | 33.04 |
| VIT_13s0019g03700.t01 | Wine grape | plastid | 26.56 | 32.49 |
| VIT_06s0004g03350.t01 | Wine grape | plastid | 27.39 | 32.35 |
| VIT_06s0004g03330.t01 | Wine grape | nucleus, plastid | 26.97 | 32.18 |
| Bra037142.1-P | Field mustard | nucleus, plastid | 48.55 | 29.7 |
| VIT_06s0004g07790.t01 | Wine grape | cytosol | 27.8 | 29.26 |
| Os03t0612400-00 | Rice | cytosol, nucleus | 47.3 | 28.72 |
Protein Annotations
| ArrayExpress:VIT_00s1247g00010 | EMBL:FN595843 | EnsemblPlants:VIT_00s1247g00010.t01 | EnsemblPlantsGene:VIT_00s1247g00010 | InterPro:IPR004883 | InterPro:LOB |
| ncoils:Coil | PANTHER:PTHR31301 | PANTHER:PTHR31301:SF22 | PFAM:PF03195 | PFscan:PS50891 | ProteinID:CCB54194 |
| ProteinID:CCB54194.1 | RefSeq:XP_003635533 | RefSeq:XP_003635533.1 | SEG:seg | UniParc:UPI00021098DB | UniProt:F6HJU3 |
| MapMan:15.5.24 | : | : | : | : | : |
Description
No Description!
Coordinates
chrUn:-:38155563..38157501
Molecular Weight (calculated)
26604.8 Da
IEP (calculated)
8.283
GRAVY (calculated)
-0.424
Length
241 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSNSPCAA CKLLRRKCTQ ECVFAPYFPP DQPQKFANVH KVFGASNVSK LLNELNAAHR EDAVNSLAYE AEARLRDPVY GCVGLISILQ QRLKQVQNDL
101: FTAKKELSAY IGPSAMLPIP QPAGCLPQQH MSNPCSSSQI PYNTPPMLGL PTGPTHGRQL VIREPHQTQQ YQHRQQILEA QQIAEAVAAR EQQEMLRTYE
201: QQQQQQQQLL VRFNSGFDAG GTVGASSFNQ MTAAISPSLA L
101: FTAKKELSAY IGPSAMLPIP QPAGCLPQQH MSNPCSSSQI PYNTPPMLGL PTGPTHGRQL VIREPHQTQQ YQHRQQILEA QQIAEAVAAR EQQEMLRTYE
201: QQQQQQQQLL VRFNSGFDAG GTVGASSFNQ MTAAISPSLA L
001: MASSSSPCAA CKFLRRKCTQ ECVFAPYFPP DQPQKFAFVH KVFGASNVAK LLNELASNQR EDAVNSLFYE AEARLRDPVY GCVGLISILQ HRLKQVNHDL
101: ENAKKELATY VGPQAMLPIL QPHFMSLPPQ PQRPSSSSAS VLTQHHHNLL PMMAIPTGQL YHQQQQQIFE AQQLAAVARE QQNEMFRAYG GGGGSSSPHH
201: QNQAQAEILR FNNGFDSVPA GSVTVTGFNQ LSSGGTAVTG MSLGGNFVDS PSTNNNYHTD QQLHHHHQPQ QHHEAQLFIP SQSSQPLPLQ TQETQTQTQP
301: NSESEEGRRN VIG
101: ENAKKELATY VGPQAMLPIL QPHFMSLPPQ PQRPSSSSAS VLTQHHHNLL PMMAIPTGQL YHQQQQQIFE AQQLAAVARE QQNEMFRAYG GGGGSSSPHH
201: QNQAQAEILR FNNGFDSVPA GSVTVTGFNQ LSSGGTAVTG MSLGGNFVDS PSTNNNYHTD QQLHHHHQPQ QHHEAQLFIP SQSSQPLPLQ TQETQTQTQP
301: NSESEEGRRN VIG
Arabidopsis Description
LBD36LOB domain-containing protein 36 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKZ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.