Factsheet for VIT_07s0197g00040.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 4
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_08s0007g00410.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66870.1	VIT_08s0007g00410.t01	AT2G37630.1	16243907

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_16s0022g02050.t01	Wine grape	cytosol, mitochondrion, nucleus	79.26	82.58
VIT_00s1247g00010.t01	Wine grape	nucleus	62.88	78.01
VIT_07s0197g00030.t01	Wine grape	nucleus	63.21	77.14
VIT_07s0197g00020.t01	Wine grape	nucleus	71.24	72.95
Solyc02g065150.1.1	Tomato	nucleus	63.21	64.95
PGSC0003DMT400002013	Potato	nucleus	61.87	64.46
PGSC0003DMT400002011	Potato	nucleus	61.2	63.54
PGSC0003DMT400025959	Potato	nucleus	58.86	56.23
Solyc02g090410.2.1	Tomato	mitochondrion, plastid	58.53	55.56
KRH62409	Soybean	nucleus	37.79	53.3
KRH53127	Soybean	nucleus	35.12	51.47
KRH76950	Soybean	nucleus	51.84	50.99
KRH28509	Soybean	nucleus	50.84	49.35
AT5G66870.1	Thale cress	nucleus	49.5	47.28
VIT_17s0000g09010.t01	Wine grape	plastid	28.43	46.2
VIT_14s0066g00680.t01	Wine grape	nucleus, plastid	26.09	45.88
CDY49845	Canola	nucleus, plastid	47.16	45.19
KRH57745	Soybean	nucleus	41.47	44.93
VIT_00s0340g00090.t01	Wine grape	nucleus	32.44	44.91
CDY52150	Canola	nucleus, plastid	47.16	44.62
VIT_13s0019g03760.t01	Wine grape	plastid	20.4	44.53
CDY12784	Canola	nucleus, plastid	49.83	44.35
VIT_06s0004g07200.t01	Wine grape	mitochondrion, nucleus	24.08	44.17
CDY01457	Canola	nucleus, plastid	49.83	44.08
Bra012112.1-P	Field mustard	nucleus, plastid	49.83	44.08
VIT_00s0125g00290.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	25.08	42.86
TraesCS4B01G079900.1	Wheat	mitochondrion, nucleus, plastid	40.13	42.25
VIT_13s0067g01880.t01	Wine grape	mitochondrion	24.08	42.11
EER93817	Sorghum	plastid	41.81	42.09
Zm00001d033335_P001	Maize	plastid	39.46	41.99
TraesCS4D01G078800.1	Wheat	mitochondrion, nucleus, plastid	39.8	41.9
Zm00001d013732_P001	Maize	plastid	41.47	41.47
GSMUA_Achr6P04670_001	Banana	mitochondrion	39.46	40.97
TraesCS4A01G235100.1	Wheat	nucleus	39.46	40.97
VIT_19s0027g01120.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	22.41	39.41
Bra032153.1-P	Field mustard	mitochondrion, nucleus	40.13	38.96
CDX68120	Canola	mitochondrion, nucleus	40.13	38.96
CDX89590	Canola	mitochondrion, nucleus	40.13	38.96
HORVU4Hr1G013630.2	Barley	nucleus	39.13	38.87
AT2G23660.2	Thale cress	mitochondrion, nucleus	40.13	38.59
VIT_13s0019g03750.t01	Wine grape	plastid	22.07	37.93
VIT_13s0019g03710.t01	Wine grape	nucleus, plastid	20.74	37.58
VIT_13s0019g03720.t01	Wine grape	nucleus, plastid	19.73	36.42
GSMUA_Achr2P17160_001	Banana	mitochondrion	36.45	36.21
VIT_13s0019g03780.t01	Wine grape	plastid	20.74	35.84
CDX81360	Canola	plastid	40.13	35.82
CDY18621	Canola	nucleus, plastid	36.12	35.64
VIT_13s0019g03700.t01	Wine grape	plastid	21.74	32.99
VIT_06s0004g03350.t01	Wine grape	plastid	22.41	32.84
VIT_06s0004g03330.t01	Wine grape	nucleus, plastid	21.74	32.18
VIT_13s0067g02380.t01	Wine grape	nucleus	24.08	32.14
Os03t0612400-00	Rice	cytosol, nucleus	39.8	29.97
Bra037142.1-P	Field mustard	nucleus, plastid	39.46	29.95
VIT_06s0004g07790.t01	Wine grape	cytosol	21.4	27.95

Protein Annotations

EntrezGene:100246034	wikigene:100246034	MapMan:15.5.24	ProteinID:CCB48252	ProteinID:CCB48252.1	ncoils:Coil
UniProt:F6H7R0	EMBL:FN595251	InterPro:IPR004883	InterPro:LOB	EntrezGene:LOC100246034	wikigene:LOC100246034
PFAM:PF03195	PFscan:PS50891	PANTHER:PTHR31301	PANTHER:PTHR31301:SF22	UniParc:UPI00019861CF	ArrayExpress:VIT_07s0197g00040
EnsemblPlantsGene:VIT_07s0197g00040	EnsemblPlants:VIT_07s0197g00040.t01	unigene:Vvi.21845	RefSeq:XP_002263845	RefSeq:XP_002263845.1	RefSeq:XP_019076448.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr7:+:14525652..14526684

Molecular Weight (calculated)

33189.3 Da

IEP (calculated)

5.625

GRAVY (calculated)

-0.536

Length

299 amino acids

Sequence
(BLAST)

001: MSSSNSPCAA CKIRRQKCTQ ECVLAPYFPP DQPQKFVNVH KVFGASNVTK LLNELNAANR EDAVNSLAYE AEARLRDPVY GCVGLISVLQ QRLKQVQSDL
101: LAAKKELAAY IGPSAMLPFI QHVEYMPQQY MSDPSSSSVI PYNMSPILGL PPGASHSGQL VIREPQPQQT QQYQHQQQQI LEAQQLATAM AVRGQEILRT
201: HEQQLQEQNL IRFDSGFDAD AMVGAASSFN QMTEAVMSPS LALGTFDDAY QLEEQQQEHQ LRPQLLPQTQ KQPQQQQPQL PQQQRGVGSE EGRSVGPSC

Best Arabidopsis Sequence Match ( AT5G66870.1 )
(BLAST)

001: MASSSSPCAA CKFLRRKCTQ ECVFAPYFPP DQPQKFAFVH KVFGASNVAK LLNELASNQR EDAVNSLFYE AEARLRDPVY GCVGLISILQ HRLKQVNHDL
101: ENAKKELATY VGPQAMLPIL QPHFMSLPPQ PQRPSSSSAS VLTQHHHNLL PMMAIPTGQL YHQQQQQIFE AQQLAAVARE QQNEMFRAYG GGGGSSSPHH
201: QNQAQAEILR FNNGFDSVPA GSVTVTGFNQ LSSGGTAVTG MSLGGNFVDS PSTNNNYHTD QQLHHHHQPQ QHHEAQLFIP SQSSQPLPLQ TQETQTQTQP
301: NSESEEGRRN VIG

Arabidopsis Description

LBD36LOB domain-containing protein 36 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKZ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.