Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_08s0007g00410.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G66870.1 | VIT_08s0007g00410.t01 | AT2G37630.1 | 16243907 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_07s0197g00040.t01 | Wine grape | cytosol, nucleus, plastid | 82.58 | 79.26 |
| VIT_07s0197g00030.t01 | Wine grape | nucleus | 65.51 | 76.73 |
| VIT_00s1247g00010.t01 | Wine grape | nucleus | 63.41 | 75.52 |
| VIT_07s0197g00020.t01 | Wine grape | nucleus | 70.03 | 68.84 |
| PGSC0003DMT400002013 | Potato | nucleus | 62.02 | 62.02 |
| Solyc02g065150.1.1 | Tomato | nucleus | 62.72 | 61.86 |
| PGSC0003DMT400002011 | Potato | nucleus | 61.32 | 61.11 |
| PGSC0003DMT400025959 | Potato | nucleus | 59.23 | 54.31 |
| Solyc02g090410.2.1 | Tomato | mitochondrion, plastid | 57.49 | 52.38 |
| KRH62409 | Soybean | nucleus | 37.28 | 50.47 |
| KRH53127 | Soybean | nucleus | 35.19 | 49.51 |
| KRH76950 | Soybean | nucleus | 51.92 | 49.01 |
| VIT_14s0066g00680.t01 | Wine grape | nucleus, plastid | 28.92 | 48.82 |
| KRH28509 | Soybean | nucleus | 50.87 | 47.4 |
| AT5G66870.1 | Thale cress | nucleus | 51.57 | 47.28 |
| VIT_17s0000g09010.t01 | Wine grape | plastid | 30.31 | 47.28 |
| VIT_06s0004g07200.t01 | Wine grape | mitochondrion, nucleus | 25.78 | 45.4 |
| CDY49845 | Canola | nucleus, plastid | 49.13 | 45.19 |
| CDY12784 | Canola | nucleus, plastid | 52.61 | 44.94 |
| CDY01457 | Canola | nucleus, plastid | 52.61 | 44.67 |
| Bra012112.1-P | Field mustard | nucleus, plastid | 52.61 | 44.67 |
| CDY52150 | Canola | nucleus, plastid | 49.13 | 44.62 |
| VIT_13s0019g03760.t01 | Wine grape | plastid | 20.91 | 43.8 |
| VIT_00s0340g00090.t01 | Wine grape | nucleus | 32.75 | 43.52 |
| KRH57745 | Soybean | nucleus | 41.81 | 43.48 |
| VIT_00s0125g00290.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 26.48 | 43.43 |
| VIT_13s0067g01880.t01 | Wine grape | mitochondrion | 25.09 | 42.11 |
| VIT_19s0027g01120.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 24.04 | 40.59 |
| Zm00001d033335_P001 | Maize | plastid | 39.72 | 40.57 |
| TraesCS4B01G079900.1 | Wheat | mitochondrion, nucleus, plastid | 40.07 | 40.49 |
| TraesCS4D01G078800.1 | Wheat | mitochondrion, nucleus, plastid | 39.72 | 40.14 |
| TraesCS4A01G235100.1 | Wheat | nucleus | 40.07 | 39.93 |
| EER93817 | Sorghum | plastid | 41.12 | 39.73 |
| GSMUA_Achr6P04670_001 | Banana | mitochondrion | 39.37 | 39.24 |
| Zm00001d013732_P001 | Maize | plastid | 40.42 | 38.8 |
| HORVU4Hr1G013630.2 | Barley | nucleus | 39.37 | 37.54 |
| CDX89590 | Canola | mitochondrion, nucleus | 39.72 | 37.01 |
| Bra032153.1-P | Field mustard | mitochondrion, nucleus | 39.72 | 37.01 |
| CDX68120 | Canola | mitochondrion, nucleus | 39.72 | 37.01 |
| VIT_13s0019g03710.t01 | Wine grape | nucleus, plastid | 20.91 | 36.36 |
| AT2G23660.2 | Thale cress | mitochondrion, nucleus | 39.37 | 36.33 |
| VIT_13s0019g03750.t01 | Wine grape | plastid | 21.95 | 36.21 |
| VIT_13s0019g03780.t01 | Wine grape | plastid | 21.6 | 35.84 |
| VIT_13s0019g03720.t01 | Wine grape | nucleus, plastid | 20.21 | 35.8 |
| CDX81360 | Canola | plastid | 39.37 | 33.73 |
| GSMUA_Achr2P17160_001 | Banana | mitochondrion | 35.19 | 33.55 |
| CDY18621 | Canola | nucleus, plastid | 35.19 | 33.33 |
| VIT_13s0067g02380.t01 | Wine grape | nucleus | 25.44 | 32.59 |
| VIT_06s0004g03350.t01 | Wine grape | plastid | 23.0 | 32.35 |
| VIT_06s0004g03330.t01 | Wine grape | nucleus, plastid | 22.3 | 31.68 |
| VIT_13s0019g03700.t01 | Wine grape | plastid | 21.6 | 31.47 |
| VIT_06s0004g07790.t01 | Wine grape | cytosol | 23.0 | 28.82 |
| Os03t0612400-00 | Rice | cytosol, nucleus | 39.02 | 28.21 |
| Bra037142.1-P | Field mustard | nucleus, plastid | 38.33 | 27.92 |
Protein Annotations
| EntrezGene:100242948 | wikigene:100242948 | MapMan:15.5.24 | ProteinID:CCB49250 | ProteinID:CCB49250.1 | ncoils:Coil |
| UniProt:F6HAJ3 | EMBL:FN595506 | InterPro:IPR004883 | InterPro:LOB | EntrezGene:LOC100242948 | wikigene:LOC100242948 |
| PFAM:PF03195 | PFscan:PS50891 | PANTHER:PTHR31301 | PANTHER:PTHR31301:SF22 | UniParc:UPI0001984F66 | ArrayExpress:VIT_16s0022g02050 |
| EnsemblPlantsGene:VIT_16s0022g02050 | EnsemblPlants:VIT_16s0022g02050.t01 | RefSeq:XP_002269874 | RefSeq:XP_002269874.2 | RefSeq:XP_010662454.1 | SEG:seg |
Description
No Description!
Coordinates
chr16:-:14420052..14420921
Molecular Weight (calculated)
31470.4 Da
IEP (calculated)
6.933
GRAVY (calculated)
-0.543
Length
287 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSNSPCAA CKLQRRKCTQ ECIYAPYFPP DQPQKFANVH KVFGASNVAK LLNEINAANR EDAVNSLAYE AEARLHDPVY GCVGMISILQ QQLKHLQNDL
101: LAAKKELAAY IGPSAMAHVG YMPQQYMSDP SSSSVIPYNM SPILGLPPGA PHGGQLIIRE PQTQQTQQNQ HQLQQILEAQ QLAAAMAARG QEIMRTHERQ
201: QQEQELLRFD NGFDADGIVG AASSFNQMTT AAMSPSRALG TFGHQLQLQP QPQPQPQLLP QTQKQPQLPQ QQQGFGSEDA RNVGPSC
101: LAAKKELAAY IGPSAMAHVG YMPQQYMSDP SSSSVIPYNM SPILGLPPGA PHGGQLIIRE PQTQQTQQNQ HQLQQILEAQ QLAAAMAARG QEIMRTHERQ
201: QQEQELLRFD NGFDADGIVG AASSFNQMTT AAMSPSRALG TFGHQLQLQP QPQPQPQLLP QTQKQPQLPQ QQQGFGSEDA RNVGPSC
001: MASSSSPCAA CKFLRRKCTQ ECVFAPYFPP DQPQKFAFVH KVFGASNVAK LLNELASNQR EDAVNSLFYE AEARLRDPVY GCVGLISILQ HRLKQVNHDL
101: ENAKKELATY VGPQAMLPIL QPHFMSLPPQ PQRPSSSSAS VLTQHHHNLL PMMAIPTGQL YHQQQQQIFE AQQLAAVARE QQNEMFRAYG GGGGSSSPHH
201: QNQAQAEILR FNNGFDSVPA GSVTVTGFNQ LSSGGTAVTG MSLGGNFVDS PSTNNNYHTD QQLHHHHQPQ QHHEAQLFIP SQSSQPLPLQ TQETQTQTQP
301: NSESEEGRRN VIG
101: ENAKKELATY VGPQAMLPIL QPHFMSLPPQ PQRPSSSSAS VLTQHHHNLL PMMAIPTGQL YHQQQQQIFE AQQLAAVARE QQNEMFRAYG GGGGSSSPHH
201: QNQAQAEILR FNNGFDSVPA GSVTVTGFNQ LSSGGTAVTG MSLGGNFVDS PSTNNNYHTD QQLHHHHQPQ QHHEAQLFIP SQSSQPLPLQ TQETQTQTQP
301: NSESEEGRRN VIG
Arabidopsis Description
LBD36LOB domain-containing protein 36 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKZ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.