CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
mitochondrion 3
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74943
CDX79747
CDX91374
CDY07778

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66870.1	CDX74943	AT2G37630.1	16243907
AT5G66870.1	CDX79747	AT2G37630.1	16243907
AT5G66870.1	CDX91374	AT2G37630.1	16243907
AT5G66870.1	CDY07778	AT2G37630.1	16243907

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037142.1-P	Field mustard	nucleus, plastid	94.06	72.33
CDX81360	Canola	plastid	77.23	69.85
CDY03987	Canola	plastid	22.11	50.76
CDY20041	Canola	plastid	21.45	49.62
CDY49773	Canola	plastid	21.12	48.48
CDY13730	Canola	plastid	21.12	48.48
CDX83724	Canola	plastid	21.12	48.48
VIT_00s1247g00010.t01	Wine grape	nucleus	36.63	46.06
CDY72536	Canola	mitochondrion	20.79	45.65
CDY51008	Canola	mitochondrion	20.46	44.6
CDY16738	Canola	plastid	24.09	41.48
CDY68853	Canola	plastid	24.75	41.44
CDY69697	Canola	plastid	24.75	41.44
VIT_07s0197g00030.t01	Wine grape	nucleus	33.33	41.22
CDY48125	Canola	plastid	23.76	40.91
AT5G66870.1	Thale cress	nucleus	40.59	39.3
KRH62409	Soybean	nucleus	27.39	39.15
CDY46781	Canola	nucleus, plastid	26.07	39.11
CDY16414	Canola	nucleus, plastid	26.07	39.11
PGSC0003DMT400002013	Potato	nucleus	36.96	39.02
Solyc02g065150.1.1	Tomato	nucleus	37.29	38.83
PGSC0003DMT400002011	Potato	nucleus	36.63	38.54
CDX77553	Canola	cytosol, mitochondrion, nucleus, plastid	21.78	38.37
CDY50718	Canola	cytosol, mitochondrion, nucleus, plastid	21.78	38.37
CDY66794	Canola	mitochondrion	20.46	38.04
CDY40054	Canola	mitochondrion	20.46	38.04
VIT_07s0197g00020.t01	Wine grape	nucleus	36.63	38.01
CDX81767	Canola	cytosol, nucleus, plastid	20.13	37.2
CDY50999	Canola	cytosol, mitochondrion, plastid	19.8	36.59
CDY49845	Canola	nucleus, plastid	37.62	36.54
KRH53127	Soybean	nucleus	24.42	36.27
VIT_07s0197g00040.t01	Wine grape	cytosol, nucleus, plastid	35.64	36.12
CDY01457	Canola	nucleus, plastid	40.26	36.09
PGSC0003DMT400025959	Potato	nucleus	36.96	35.78
CDY12784	Canola	nucleus, plastid	39.6	35.71
KRH76950	Soybean	nucleus	35.64	35.53
CDY52150	Canola	nucleus, plastid	36.96	35.44
Solyc02g090410.2.1	Tomato	mitochondrion, plastid	36.63	35.24
VIT_16s0022g02050.t01	Wine grape	cytosol, mitochondrion, nucleus	33.33	35.19
CDY24027	Canola	mitochondrion	21.78	35.11
CDY10714	Canola	mitochondrion	21.78	34.92
KRH28509	Soybean	nucleus	34.65	34.09
KRH57745	Soybean	nucleus	31.02	34.06
GSMUA_Achr6P04670_001	Banana	mitochondrion	31.02	32.64
CDY06285	Canola	nucleus, plastid	20.13	32.11
Zm00001d033335_P001	Maize	plastid	29.7	32.03
EER93817	Sorghum	plastid	31.35	31.99
CDY22713	Canola	plastid	19.8	31.41
TraesCS4D01G078800.1	Wheat	mitochondrion, nucleus, plastid	29.37	31.34
TraesCS4B01G079900.1	Wheat	mitochondrion, nucleus, plastid	29.04	30.99
TraesCS4A01G235100.1	Wheat	nucleus	29.37	30.9
Zm00001d013732_P001	Maize	plastid	30.03	30.43
CDY67958	Canola	plastid	19.8	30.3
CDY23903	Canola	plastid	19.8	30.3
CDX89590	Canola	mitochondrion, nucleus	30.69	30.19
CDX68120	Canola	mitochondrion, nucleus	30.69	30.19
GSMUA_Achr2P17160_001	Banana	mitochondrion	29.37	29.57
HORVU4Hr1G013630.2	Barley	nucleus	28.71	28.9
CDY06988	Canola	plastid	18.15	27.36
CDX93178	Canola	cytosol, nucleus, plastid	20.13	26.87
CDY04570	Canola	plastid	18.81	26.15
CDY15755	Canola	plastid	18.48	25.81
CDX77182	Canola	plastid	18.48	25.81
CDY62454	Canola	plastid	18.48	25.81
CDX93609	Canola	nucleus	18.81	25.33
CDY24903	Canola	mitochondrion	19.14	25.11
CDY31207	Canola	plastid	17.82	25.0
CDX95115	Canola	plastid	18.81	25.0
CDY07604	Canola	mitochondrion	19.14	25.0
CDX83290	Canola	plastid	17.82	23.38
CDY02059	Canola	mitochondrion	18.15	23.31
CDY10726	Canola	mitochondrion	18.15	23.31
Os03t0612400-00	Rice	cytosol, nucleus	28.71	21.91

Protein Annotations

EnsemblPlants:CDY18621	EnsemblPlantsGene:GSBRNA2T00005682001	InterPro:IPR004883	InterPro:LOB	PANTHER:PTHR31301	PANTHER:PTHR31301:SF63
PFAM:PF03195	PFscan:PS50891	ProteinID:CDY18621	ProteinID:CDY18621.1	SEG:seg	UniParc:UPI0004EE9AB2
UniProt:A0A078G024	MapMan:15.5.24	:	:	:	:

Description

BnaA09g07740DBnaA09g07740D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G024]

Coordinates

chrLK032087:+:214689..215600

Molecular Weight (calculated)

34910.2 Da

IEP (calculated)

6.593

GRAVY (calculated)

-0.715

Length

303 amino acids

Sequence
(BLAST)

001: MASSNSPCSA CKFLRRRCTR ECVFAPHFPA DQPNKFSWVH KAFGASNVAK LLSELTFNQR EDAVTSLVYE AETRIQDPVY GCIGLISLQQ QRLKQIQRDT
101: DVARRELATY IGPQAMLPIL QPQQTHLMPQ TPPLQQFVPE TKQAYFMPET QQQTQQPQPE TQQTQFMPQT QETQFMPQTD QTQSMPQTQQ MQFIPQAQQF
201: MPQTQRPSSS SVSAELTQQQ HHDLFPSMAI PTAQLYQQQF FEFQQLEAVA REKHSEMLRA YGEEGSSSSH QHHQNQPQAQ VLRFTDGFDS VVCTDRFCYI
301: NRV

Best Arabidopsis Sequence Match ( AT2G23660.1 )
(BLAST)

001: MASTPCAACK LLRRKCTQEC VFAPYFPPTN PQKFIFVHRV FGASNVTKIL NDLPPDQRED TVNSLFYEAE ARIRDPIYGC VGLISFLQQY LKKIQQDLLT
101: AKEELVGYLG PDAVIPPPYL PPIGNNPPPN FMMSMEGMPP GVIPQGEPLM IREPNMSQQH HHQQPQDEQL QFIASDAQRM AAMMLERGDQ QGMFNGYGID
201: NNGSVTATGF NQMDVNDQGA GGSLSGPSLA LGSFGDAYQM GQETEHGHIN HDQLQTQLML QPPLQEGQEQ TEEGQFLMQP MGQENLHDEE EEEELEPPVK
301: WRMSENKEAS F

Arabidopsis Description

LBD10LOB domain-containing protein 10 [Source:UniProtKB/Swiss-Prot;Acc:O64836]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.