CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000491.1-P	Field mustard	plastid	100.0	100.0
CDY31207	Canola	plastid	90.91	97.22
AT2G28500.1	Thale cress	plastid	83.55	83.19
CDY62454	Canola	plastid	77.92	82.95
CDX77182	Canola	plastid	77.49	82.49
CDY15755	Canola	plastid	76.19	81.11
CDY04570	Canola	plastid	74.46	78.9
CDY22713	Canola	plastid	59.74	72.25
CDY06285	Canola	nucleus, plastid	57.58	70.0
KRH10407	Soybean	mitochondrion	49.35	66.28
CDX93609	Canola	nucleus	63.2	64.89
CDX95115	Canola	plastid	62.34	63.16
Solyc11g072470.1.1	Tomato	plastid	50.65	61.9
VIT_06s0004g03330.t01	Wine grape	nucleus, plastid	54.11	61.88
KRG89044	Soybean	nucleus, plastid	54.55	61.76
KRH24932	Soybean	nucleus, plastid	53.68	61.39
Solyc04g050010.1.1	Tomato	cytosol	43.72	61.21
KRH22937	Soybean	plastid	52.38	61.11
Solyc06g005090.2.1	Tomato	plastid	51.95	60.61
VIT_06s0004g03350.t01	Wine grape	plastid	52.81	59.8
VIT_13s0019g03700.t01	Wine grape	plastid	50.22	58.88
PGSC0003DMT400019410	Potato	plastid	50.22	58.59
PGSC0003DMT400010597	Potato	cytosol, nucleus, plastid	43.29	57.8
PGSC0003DMT400065346	Potato	plastid	51.95	57.42
CDY51008	Canola	mitochondrion	33.33	55.4
CDY72536	Canola	mitochondrion	32.9	55.07
KRH34918	Soybean	plastid	52.38	54.5
KRG91848	Soybean	plastid	52.38	54.5
Solyc05g048740.2.1	Tomato	nucleus, plastid	49.78	53.49
GSMUA_Achr6P33070_001	Banana	plastid	45.02	53.06
PGSC0003DMT400065297	Potato	plastid	48.05	51.39
GSMUA_Achr9P04330_001	Banana	plastid	38.1	49.44
CDY03987	Canola	plastid	28.14	49.24
TraesCS1A01G062200.1	Wheat	cytosol, plastid	43.72	49.03
CDY49773	Canola	plastid	27.71	48.48
CDX83724	Canola	plastid	27.71	48.48
CDY13730	Canola	plastid	27.71	48.48
Zm00001d035498_P001	Maize	plastid	46.32	48.42
CDY20041	Canola	plastid	27.27	48.09
EES18939	Sorghum	plastid	45.02	47.49
TraesCS1B01G080600.1	Wheat	cytosol, plastid	44.16	47.44
HORVU1Hr1G012720.1	Barley	cytosol, plastid	44.16	47.44
TraesCS2D01G008400.1	Wheat	plastid	44.16	47.44
EER92422	Sorghum	plastid	47.62	46.81
Zm00001d010978_P001	Maize	plastid	42.86	46.7
Zm00001d047752_P001	Maize	plastid	47.19	45.61
TraesCS4D01G197400.1	Wheat	plastid	43.72	45.29
Zm00001d028721_P001	Maize	plastid	45.89	45.11
HORVU4Hr1G056890.2	Barley	plastid	43.72	45.09
TraesCS4B01G197100.1	Wheat	plastid	43.29	44.84
TraesCS4A01G107300.1	Wheat	plastid	42.86	44.39
CDX77553	Canola	cytosol, mitochondrion, nucleus, plastid	32.9	44.19
Os03t0287400-01	Rice	plastid	45.45	43.93
CDY50718	Canola	cytosol, mitochondrion, nucleus, plastid	32.47	43.6
CDY66794	Canola	mitochondrion	30.3	42.94
CDY40054	Canola	mitochondrion	30.3	42.94
CDX81767	Canola	cytosol, nucleus, plastid	30.3	42.68
Solyc06g075330.1.1	Tomato	golgi, nucleus, plastid	43.72	41.74
CDY10714	Canola	mitochondrion	33.77	41.27
CDY24027	Canola	mitochondrion	33.33	40.96
CDY50999	Canola	cytosol, mitochondrion, plastid	29.0	40.85
CDY48125	Canola	plastid	28.14	36.93
CDY16738	Canola	plastid	28.14	36.93
CDY68853	Canola	plastid	28.57	36.46
CDY69697	Canola	plastid	28.14	35.91
CDY16414	Canola	nucleus, plastid	28.57	32.67
CDY46781	Canola	nucleus, plastid	28.57	32.67
CDY67958	Canola	plastid	27.71	32.32
CDY23903	Canola	plastid	27.71	32.32
CDY06988	Canola	plastid	27.71	31.84
CDX93178	Canola	cytosol, nucleus, plastid	28.57	29.07
CDY24903	Canola	mitochondrion	28.14	28.14
CDY07604	Canola	mitochondrion	27.71	27.59
CDY10726	Canola	mitochondrion	28.14	27.54
CDY02059	Canola	mitochondrion	28.14	27.54
CDX68120	Canola	mitochondrion, nucleus	29.0	21.75
CDX89590	Canola	mitochondrion, nucleus	29.0	21.75
CDY52150	Canola	nucleus, plastid	28.14	20.57
CDY49845	Canola	nucleus, plastid	27.71	20.51
CDY12784	Canola	nucleus, plastid	28.57	19.64
CDY01457	Canola	nucleus, plastid	28.57	19.53
CDY18621	Canola	nucleus, plastid	23.38	17.82
CDX81360	Canola	plastid	24.24	16.72

Protein Annotations

EnsemblPlants:CDX83290	EnsemblPlantsGene:GSBRNA2T00138844001	InterPro:IPR004883	InterPro:LOB	PANTHER:PTHR31301	PANTHER:PTHR31301:SF6
PFAM:PF03195	PFscan:PS50891	ProteinID:CDX83290	ProteinID:CDX83290.1	SEG:seg	UniParc:UPI000253FFB1
MapMan:15.5.24	:	:	:	:	:

Description

BnaA03g22160D

Coordinates

chrLK031832:-:866495..867983

Molecular Weight (calculated)

25397.9 Da

IEP (calculated)

4.648

GRAVY (calculated)

-0.376

Length

231 amino acids

Sequence
(BLAST)

001: MLKMETFGGI SVAAPTSSAV AKTTTPANSA SPTSSPPPPL SPEQPQQQTV VLSPCAACKI LRRRCADKCV LAPYFPPTDP AKFIIAHRVF GASNIIKFLQ
101: ELPESQRTDT VNSMVYEAGA RMRDPVYGCA GAIYHLQKQV CELQAQLAKT QVELVSMQLQ RSDLLELLHK TEQANLSEQQ EGQQNMSFES SFESGDEFIS
201: SHDEVTNDLG FLDDNNNNNN SSMLWSDPLW T

Best Arabidopsis Sequence Match ( AT2G28500.1 )
(BLAST)

001: MLKMEINGGV ATPTASAVAK VTETTTPVNS PSPTSSPPPP PSPQQPPQPP VVLSPCAACK ILRRRCADKC VLAPYFPPTD PAKFTIAHRV FGASNIIKFL
101: QELPESQRTD AVNSMVYEAG ARMRDPVYGC AGAIYHLQRQ VSELQAQLAK TQVELVGMQL QRSSLLELIY NMEQTKLSVQ EQGQQKMSFE SSFESGDEFI
201: SSPDEESNDL GFLEDNNNNN NSSMSWWDPL WT

Arabidopsis Description

LBD11LOB domain-containing protein 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK08]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.