Factsheet for GSMUA_Achr6P33070_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
mitochondrion 1
plastid 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P04330_001	Banana	plastid	59.69	65.73
GSMUA_Achr7P15500_001	Banana	nucleus	64.8	64.8
GSMUA_Achr8P09700_001	Banana	cytosol	61.73	59.31
AT1G07900.1	Thale cress	plastid	55.61	57.37
CDY22713	Canola	plastid	53.57	54.97
CDY06285	Canola	nucleus, plastid	53.06	54.74
Bra018675.1-P	Field mustard	plastid	56.63	53.88
GSMUA_Achr4P16790_001	Banana	plastid	50.0	51.58
Bra031599.1-P	Field mustard	nucleus, plastid	53.57	50.72
GSMUA_Achr10P...	Banana	mitochondrion	40.82	50.63
GSMUA_Achr10P...	Banana	mitochondrion	40.82	50.63
GSMUA_Achr10P...	Banana	plastid	63.27	49.6
GSMUA_Achr3P10050_001	Banana	cytosol, nucleus, plastid	39.29	49.36
GSMUA_Achr5P29470_001	Banana	mitochondrion, nucleus	35.71	48.95
CDY15755	Canola	plastid	54.08	48.85
CDY62454	Canola	plastid	54.08	48.85
CDY04570	Canola	plastid	54.08	48.62
CDX93609	Canola	nucleus	55.61	48.44
CDX77182	Canola	plastid	53.57	48.39
GSMUA_Achr6P15660_001	Banana	mitochondrion, nucleus, plastid	39.8	48.15
GSMUA_Achr9P18030_001	Banana	mitochondrion, nucleus, plastid	39.8	48.15
AT2G28500.1	Thale cress	plastid	56.63	47.84
CDX95115	Canola	plastid	55.61	47.81
Bra035698.1-P	Field mustard	plastid	55.1	47.16
CDY31207	Canola	plastid	51.53	46.76
Bra011942.1-P	Field mustard	plastid	54.59	45.92
CDX83290	Canola	plastid	53.06	45.02
Bra000491.1-P	Field mustard	plastid	53.06	45.02
GSMUA_Achr3P17800_001	Banana	mitochondrion, plastid	53.57	44.87
GSMUA_Achr5P02190_001	Banana	mitochondrion	37.76	44.58
GSMUA_Achr8P02800_001	Banana	mitochondrion, nucleus	36.73	44.17
GSMUA_Achr2P13170_001	Banana	nucleus	37.76	42.53
GSMUA_Achr7P00880_001	Banana	cytosol, nucleus, plastid	39.8	41.94
GSMUA_Achr4P32000_001	Banana	cytosol, mitochondrion, nucleus, plastid	37.24	40.11
GSMUA_AchrUn_...	Banana	plastid	33.16	35.33
GSMUA_Achr5P07460_001	Banana	nucleus	34.69	32.54
GSMUA_Achr7P22200_001	Banana	nucleus	34.18	31.75
GSMUA_Achr11P...	Banana	cytosol	34.69	31.34
GSMUA_Achr6P04670_001	Banana	mitochondrion	33.16	22.57
GSMUA_Achr2P17160_001	Banana	mitochondrion	28.06	18.27

Protein Annotations

EnsemblPlants:GSMUA_Achr6P33070_001	EnsemblPlants:GSMUA_Achr6T33070_001	EnsemblPlantsGene:GSMUA_Achr6G33070_001	InterPro:IPR004883	InterPro:LOB	ncoils:Coil
PANTHER:PTHR31301	PANTHER:PTHR31301:SF6	PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI0002956E48
UniProt:M0TCA1	MapMan:15.5.24	:	:	:	:

Description

LOB domain-containing protein 1 [Source:GMGC_GENE;Acc:GSMUA_Achr6G33070_001]

Coordinates

chr6:+:32243049..32243766

Molecular Weight (calculated)

20716.7 Da

IEP (calculated)

7.370

GRAVY (calculated)

0.034

Length

196 amino acids

Sequence
(BLAST)

001: MGSRDTTSTK TALYSYSPSP SSSPPAAAVL SPCAACKVLR RRCVDKCVLA PYFPPTDPQK FTNAHRVFGA SNIIKLLQDI PVSQRADAVS SMVYEANARI
101: RDPVYGCAGA IFQLQRQVNE LQAQLARAQA EAVNVQAQNA NVMALICMGM SHTLHDGAAL AVDALAAAPL NDSFSLDDGS LHGGAGAAIW EAPIWT

Best Arabidopsis Sequence Match ( AT1G07900.1 )
(BLAST)

001: MESKSDASVA TTPIISSSSS PPPSLSPRVV LSPCAACKIL RRRCAERCVL APYFPPTDPA KFTIAHRVFG ASNIIKFLQE LPESQRTDAV NSMVYEAEAR
101: IRDPVYGCAG AIYHLQRQVS ELQAQLAKAQ VEMVNMQFQR SNLLELIYNM DQQQKQEQDN MSFESNDLGF LEDKSNTNSS MLWWDPLWTC

Arabidopsis Description

LBD1LBD1 [Source:UniProtKB/TrEMBL;Acc:A0A178WM56]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.