Factsheet for Bra031599.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06285	Canola	nucleus, plastid	91.3	99.47
Bra018675.1-P	Field mustard	plastid	83.09	83.5
AT1G07900.1	Thale cress	plastid	72.46	78.95
Bra035698.1-P	Field mustard	plastid	71.01	64.19
KRH10407	Soybean	mitochondrion	52.17	62.79
Bra000491.1-P	Field mustard	plastid	69.08	61.9
Solyc04g050010.1.1	Tomato	cytosol	49.28	61.82
Bra011942.1-P	Field mustard	plastid	69.08	61.37
PGSC0003DMT400010597	Potato	cytosol, nucleus, plastid	49.76	59.54
KRH22937	Soybean	plastid	55.56	58.08
KRH24932	Soybean	nucleus, plastid	56.52	57.92
KRG89044	Soybean	nucleus, plastid	56.04	56.86
Solyc11g072470.1.1	Tomato	plastid	51.69	56.61
VIT_13s0019g03700.t01	Wine grape	plastid	53.62	56.35
VIT_06s0004g03330.t01	Wine grape	nucleus, plastid	54.59	55.94
VIT_06s0004g03350.t01	Wine grape	plastid	55.07	55.88
GSMUA_Achr6P33070_001	Banana	plastid	50.72	53.57
Solyc06g005090.2.1	Tomato	plastid	51.21	53.54
Solyc05g048740.2.1	Tomato	nucleus, plastid	53.62	51.63
Bra025294.1-P	Field mustard	plastid	32.85	51.52
PGSC0003DMT400019410	Potato	plastid	48.79	51.01
KRH34918	Soybean	plastid	54.11	50.45
KRG91848	Soybean	plastid	54.11	50.45
PGSC0003DMT400065346	Potato	plastid	50.24	49.76
Bra039072.1-P	Field mustard	plastid	31.4	49.62
Bra033019.1-P	Field mustard	plastid	31.4	49.24
GSMUA_Achr9P04330_001	Banana	plastid	42.03	48.88
PGSC0003DMT400065297	Potato	plastid	47.83	45.83
TraesCS1A01G062200.1	Wheat	cytosol, plastid	45.41	45.63
Zm00001d035498_P001	Maize	plastid	46.86	43.89
HORVU1Hr1G012720.1	Barley	cytosol, plastid	45.41	43.72
TraesCS2D01G008400.1	Wheat	plastid	45.41	43.72
TraesCS1B01G080600.1	Wheat	cytosol, plastid	45.41	43.72
Zm00001d010978_P001	Maize	plastid	43.96	42.92
EES18939	Sorghum	plastid	45.41	42.92
EER92422	Sorghum	plastid	48.31	42.55
Bra014907.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	35.27	42.44
Zm00001d047752_P001	Maize	plastid	48.31	41.84
Bra026042.1-P	Field mustard	mitochondrion	32.85	41.72
Zm00001d028721_P001	Maize	plastid	47.34	41.7
TraesCS4D01G197400.1	Wheat	plastid	44.44	41.26
TraesCS4B01G197100.1	Wheat	plastid	44.44	41.26
HORVU4Hr1G056890.2	Barley	plastid	44.44	41.07
TraesCS4A01G107300.1	Wheat	plastid	43.48	40.36
Bra026716.1-P	Field mustard	mitochondrion	31.88	40.24
Bra021612.1-P	Field mustard	nucleus	36.72	40.0
Bra022780.1-P	Field mustard	mitochondrion, nucleus	36.23	39.89
Bra018335.1-P	Field mustard	mitochondrion	36.23	39.68
Os03t0287400-01	Rice	plastid	45.41	39.33
Bra038606.1-P	Field mustard	plastid	33.82	38.67
Bra035860.1-P	Field mustard	plastid	32.85	38.64
Solyc06g075330.1.1	Tomato	golgi, nucleus, plastid	42.51	36.36
Bra039733.1-P	Field mustard	nucleus, plastid	32.85	33.66
Bra000188.1-P	Field mustard	plastid	31.88	33.17
Bra016992.1-P	Field mustard	plastid	31.88	32.84
Bra004572.1-P	Field mustard	cytosol, mitochondrion, nucleus	32.37	30.04
Bra018320.1-P	Field mustard	mitochondrion	29.95	26.27
Bra032153.1-P	Field mustard	mitochondrion, nucleus	35.27	23.7
Bra012112.1-P	Field mustard	nucleus, plastid	35.75	21.89
Bra037142.1-P	Field mustard	nucleus, plastid	29.95	15.74

Protein Annotations

EnsemblPlants:Bra031599.1	EnsemblPlants:Bra031599.1-P	EnsemblPlantsGene:Bra031599	InterPro:IPR004883	InterPro:LOB	ncoils:Coil
PANTHER:PTHR31301	PANTHER:PTHR31301:SF6	PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI000254337A
UniProt:M4ES21	MapMan:15.5.24	:	:	:	:

Description

AT2G28500 (E=2e-068) LBD11 | LBD11 (LOB DOMAIN-CONTAINING PROTEIN 11)

Coordinates

chrA09:-:35646044..35647161

Molecular Weight (calculated)

23135.6 Da

IEP (calculated)

4.597

GRAVY (calculated)

-0.267

Length

207 amino acids

Sequence
(BLAST)

001: MPDMESKGDA SAAIIYASPA SSPPPPRVVL SPCAACKILR RRCGEKCVLA PYFPPTEPAK FSIAHRVFGA SNIIKLLQEL PESQRIDAVK SLVYEAEARI
101: RDPVYGSTGA IYNLQRQVSE LQAELAKAQV EIVSMQFQRS NLLELINNMD QPNQDQHKMM AFESSLGNCE HDEFISSSDE ESNDFGFLED KYFNTNSLML
201: WCDPLLI

Best Arabidopsis Sequence Match ( AT1G07900.1 )
(BLAST)

001: MESKSDASVA TTPIISSSSS PPPSLSPRVV LSPCAACKIL RRRCAERCVL APYFPPTDPA KFTIAHRVFG ASNIIKFLQE LPESQRTDAV NSMVYEAEAR
101: IRDPVYGCAG AIYHLQRQVS ELQAQLAKAQ VEMVNMQFQR SNLLELIYNM DQQQKQEQDN MSFESNDLGF LEDKSNTNSS MLWWDPLWTC

Arabidopsis Description

LBD1LBD1 [Source:UniProtKB/TrEMBL;Acc:A0A178WM56]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.