Factsheet for Bra004572.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY67958	Canola	plastid	88.79	100.0
CDY23903	Canola	plastid	87.89	98.99
AT2G40470.1	Thale cress	cytosol, nucleus, plastid	91.48	91.07
Bra000188.1-P	Field mustard	plastid	80.27	89.95
Bra016992.1-P	Field mustard	plastid	78.92	87.56
KRH53776	Soybean	nucleus	73.09	73.42
VIT_13s0067g02380.t01	Wine grape	nucleus	73.54	73.21
KRH64170	Soybean	nucleus	71.75	72.07
Solyc06g050430.2.1	Tomato	nucleus	68.16	70.05
VIT_06s0004g07790.t01	Wine grape	cytosol	63.68	62.01
KRH17149	Soybean	cytosol, mitochondrion, nucleus	61.88	55.42
KRH72805	Soybean	cytosol, mitochondrion, nucleus	62.78	55.34
Bra025294.1-P	Field mustard	plastid	32.29	54.55
Bra039072.1-P	Field mustard	plastid	31.39	53.44
Bra033019.1-P	Field mustard	plastid	30.49	51.52
Bra018320.1-P	Field mustard	mitochondrion	54.26	51.27
PGSC0003DMT400074783	Potato	mitochondrion	56.95	46.35
Bra014907.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	35.43	45.93
Bra026042.1-P	Field mustard	mitochondrion	32.29	44.17
Bra026716.1-P	Field mustard	mitochondrion	31.39	42.68
Bra022780.1-P	Field mustard	mitochondrion, nucleus	35.43	42.02
Bra018335.1-P	Field mustard	mitochondrion	35.43	41.8
Bra021612.1-P	Field mustard	nucleus	34.53	40.53
Bra035860.1-P	Field mustard	plastid	31.39	39.77
Bra038606.1-P	Field mustard	plastid	31.84	39.23
Bra039733.1-P	Field mustard	nucleus, plastid	32.29	35.64
Bra031599.1-P	Field mustard	nucleus, plastid	30.04	32.37
Bra018675.1-P	Field mustard	plastid	29.15	31.55
Bra011942.1-P	Field mustard	plastid	31.84	30.47
Bra035698.1-P	Field mustard	plastid	30.49	29.69
Bra000491.1-P	Field mustard	plastid	29.15	28.14
Bra032153.1-P	Field mustard	mitochondrion, nucleus	31.84	23.05
Bra012112.1-P	Field mustard	nucleus, plastid	30.94	20.41
Bra037142.1-P	Field mustard	nucleus, plastid	30.49	17.26

Protein Annotations

EnsemblPlants:Bra004572.1	EnsemblPlants:Bra004572.1-P	EnsemblPlantsGene:Bra004572	InterPro:IPR004883	InterPro:LOB	ncoils:Coil
PANTHER:PTHR31301	PANTHER:PTHR31301:SF2	PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI0002547581
UniProt:M4CK38	MapMan:15.5.24	:	:	:	:

Description

AT2G40470 (E=2e-087) LBD15 | LBD15 (LOB DOMAIN-CONTAINING PROTEIN 15)

Coordinates

chrA05:-:848386..849380

Molecular Weight (calculated)

24455.2 Da

IEP (calculated)

8.570

GRAVY (calculated)

-0.432

Length

223 amino acids

Sequence
(BLAST)

001: MSRERERLEE IGKKIKREAD AWPNQMAGIR RHISGPPGAL NTITPCAACK LLRRRCAQEC PFSPYFSPYE PLKFASVHKV FGASNVSKML MEVPEGQRAD
101: AANSLVYEAN VRLRDPVYGC MGAISALQQQ VQALQAELTA VRSEILKYKQ REAVATLIVP SNSQYHNSGG VSVIALPPQT PSTPPQPTAA HPPPPPSSCV
201: YSQPTTRALE YGEIESENNS YFG

Best Arabidopsis Sequence Match ( AT2G40470.1 )
(BLAST)

001: MSRERERFEE IGKKIKREAD AWPHQMAGIR RPMSGPPGTL NTITPCAACK LLRRRCAQEC PFSPYFSPHE PHKFASVHKV FGASNVSKML MEVPESQRAD
101: AANSLVYEAN VRLRDPVYGC MGAISALQQQ VQALQAELTA VRSEILKYKQ REAVATLIVP SNSQVAGFHN SGGVSVIAPP PQRPTTPPQP TTAHPPSPSS
201: CVFSQPTTRD LEYGNIESEN NYFG

Arabidopsis Description

LBD15LOB domain-containing protein 15 [Source:UniProtKB/Swiss-Prot;Acc:Q8L5T5]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.