Factsheet for Bra035860.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16738	Canola	plastid	97.73	97.73
Bra038606.1-P	Field mustard	plastid	91.48	88.95
CDY69697	Canola	plastid	91.48	88.95
AT5G63090.3	Thale cress	plastid	89.77	84.95
Bra039072.1-P	Field mustard	plastid	49.43	66.41
Bra033019.1-P	Field mustard	plastid	49.43	65.91
Bra025294.1-P	Field mustard	plastid	48.86	65.15
VIT_17s0000g09010.t01	Wine grape	plastid	64.77	61.96
PGSC0003DMT400046644	Potato	nucleus, plastid	63.64	58.64
KRH54338	Soybean	plastid	61.36	58.38
PGSC0003DMT400069646	Potato	plastid	57.95	58.29
KRH03242	Soybean	nucleus, plastid	62.5	58.2
KRH63606	Soybean	plastid	59.66	57.69
KRH57118	Soybean	plastid	62.5	55.84
Solyc03g112430.1.1	Tomato	nucleus, plastid	61.93	55.61
Solyc06g071660.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	57.39	49.75
Bra026042.1-P	Field mustard	mitochondrion	41.48	44.79
Bra014907.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	43.18	44.19
Bra039733.1-P	Field mustard	nucleus, plastid	50.0	43.56
Bra026716.1-P	Field mustard	mitochondrion	39.2	42.07
Os01t0169400-01	Rice	plastid	57.95	40.64
TraesCS3D01G093500.1	Wheat	plastid	57.39	39.3
TraesCS3B01G108500.1	Wheat	plastid	57.39	39.3
TraesCS3A01G093200.1	Wheat	plastid	56.82	38.91
Zm00001d039694_P001	Maize	plastid	57.39	38.7
Bra018335.1-P	Field mustard	mitochondrion	40.91	38.1
EES00235	Sorghum	plastid	57.95	38.06
Bra022780.1-P	Field mustard	mitochondrion, nucleus	40.34	37.77
Bra021612.1-P	Field mustard	nucleus	39.77	36.84
HORVU3Hr1G016690.1	Barley	plastid	56.82	36.1
Bra000188.1-P	Field mustard	plastid	39.77	35.18
Bra016992.1-P	Field mustard	plastid	38.07	33.33
Bra031599.1-P	Field mustard	nucleus, plastid	38.64	32.85
Bra018675.1-P	Field mustard	plastid	38.07	32.52
Bra004572.1-P	Field mustard	cytosol, mitochondrion, nucleus	39.77	31.39
Bra035698.1-P	Field mustard	plastid	36.93	28.38
Bra011942.1-P	Field mustard	plastid	36.93	27.9
Bra000491.1-P	Field mustard	plastid	35.8	27.27
Bra018320.1-P	Field mustard	mitochondrion	34.66	25.85
Bra032153.1-P	Field mustard	mitochondrion, nucleus	44.32	25.32
Bra012112.1-P	Field mustard	nucleus, plastid	47.16	24.56
Bra037142.1-P	Field mustard	nucleus, plastid	41.48	18.53

Protein Annotations

EnsemblPlants:Bra035860.1	EnsemblPlants:Bra035860.1-P	EnsemblPlantsGene:Bra035860	InterPro:IPR004883	InterPro:LOB	ncoils:Coil
PANTHER:PTHR31301	PANTHER:PTHR31301:SF12	PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI0002542110
UniProt:M4F460	MapMan:15.5.24	:	:	:	:

Description

AT5G63090 (E=6e-062) LOB | LOB (LATERAL ORGAN BOUNDARIES)

Coordinates

chrA09:-:3268177..3268707

Molecular Weight (calculated)

19266.8 Da

IEP (calculated)

8.371

GRAVY (calculated)

-0.453

Length

176 amino acids

Sequence
(BLAST)

001: MASSSSNTYK SPCAACTFLR RKCMPGCISP PYFPPEEPHK FANVHKIFGA SNVTKLLNEL LPHQREDAVN SLAYEAEARV RDPVYGCVGA ISYLQRQVHR
101: LQKELDAANA DLVHYGLSTS TPSNVVDLVF QPQPLPQQPQ QVNPVYRLPG ASRGTGGSCG TFLPWNNGHN QQGGNM

Best Arabidopsis Sequence Match ( AT5G63090.1 )
(BLAST)

001: MASSSNSYNS PCAACKFLRR KCMPGCIFAP YFPPEEPHKF ANVHKIFGAS NVTKLLNELL PHQREDAVNS LAYEAEARVR DPVYGCVGAI SYLQRQVHRL
101: QKELDAANAD LAHYGLSTSA AGAPGNVVDL VFQPQPLPSQ QLPPLNPVYR LSGASPVMNQ MPRGTGGSYG TFLPWNNGHD QQGGNM

Arabidopsis Description

LOBLOB [Source:UniProtKB/TrEMBL;Acc:A0A178UKE6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.