Factsheet for Bra035698.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY62454	Canola	plastid	93.01	98.16
Bra011942.1-P	Field mustard	plastid	89.52	87.98
AT2G28500.1	Thale cress	plastid	89.08	87.93
Bra000491.1-P	Field mustard	plastid	83.84	83.12
Bra018675.1-P	Field mustard	plastid	67.69	75.24
Bra031599.1-P	Field mustard	nucleus, plastid	64.19	71.01
KRH10407	Soybean	mitochondrion	50.66	67.44
Solyc04g050010.1.1	Tomato	cytosol	45.85	63.64
KRG89044	Soybean	nucleus, plastid	55.46	62.25
KRH22937	Soybean	plastid	53.71	62.12
Solyc11g072470.1.1	Tomato	plastid	51.09	61.9
KRH24932	Soybean	nucleus, plastid	54.59	61.88
VIT_06s0004g03330.t01	Wine grape	nucleus, plastid	54.15	61.39
VIT_06s0004g03350.t01	Wine grape	plastid	53.71	60.29
PGSC0003DMT400010597	Potato	cytosol, nucleus, plastid	44.98	59.54
VIT_13s0019g03700.t01	Wine grape	plastid	51.09	59.39
PGSC0003DMT400019410	Potato	plastid	51.09	59.09
Solyc06g005090.2.1	Tomato	plastid	51.09	59.09
KRH34918	Soybean	plastid	53.71	55.41
Solyc05g048740.2.1	Tomato	nucleus, plastid	51.97	55.35
GSMUA_Achr6P33070_001	Banana	plastid	47.16	55.1
PGSC0003DMT400065346	Potato	plastid	50.22	55.02
KRG91848	Soybean	plastid	53.28	54.95
PGSC0003DMT400065297	Potato	plastid	48.47	51.39
Bra025294.1-P	Field mustard	plastid	28.38	49.24
TraesCS1A01G062200.1	Wheat	cytosol, plastid	44.1	49.03
GSMUA_Achr9P04330_001	Banana	plastid	37.99	48.88
Bra039072.1-P	Field mustard	plastid	27.95	48.85
Bra033019.1-P	Field mustard	plastid	27.95	48.48
TraesCS1B01G080600.1	Wheat	cytosol, plastid	44.1	46.98
TraesCS2D01G008400.1	Wheat	plastid	44.1	46.98
HORVU1Hr1G012720.1	Barley	cytosol, plastid	44.1	46.98
Zm00001d035498_P001	Maize	plastid	44.98	46.61
EES18939	Sorghum	plastid	44.54	46.58
Zm00001d010978_P001	Maize	plastid	42.36	45.75
Zm00001d047752_P001	Maize	plastid	47.6	45.61
EER92422	Sorghum	plastid	46.72	45.53
HORVU4Hr1G056890.2	Barley	plastid	44.1	45.09
TraesCS4D01G197400.1	Wheat	plastid	43.67	44.84
Zm00001d028721_P001	Maize	plastid	45.85	44.68
TraesCS4A01G107300.1	Wheat	plastid	43.23	44.39
TraesCS4B01G197100.1	Wheat	plastid	43.23	44.39
Bra014907.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	32.75	43.6
Os03t0287400-01	Rice	plastid	44.98	43.1
Bra026042.1-P	Field mustard	mitochondrion	30.13	42.33
Bra021612.1-P	Field mustard	nucleus	34.5	41.58
Bra022780.1-P	Field mustard	mitochondrion, nucleus	34.06	41.49
Solyc06g075330.1.1	Tomato	golgi, nucleus, plastid	43.67	41.32
Bra018335.1-P	Field mustard	mitochondrion	34.06	41.27
Bra026716.1-P	Field mustard	mitochondrion	28.38	39.63
Bra035860.1-P	Field mustard	plastid	28.38	36.93
Bra038606.1-P	Field mustard	plastid	28.82	36.46
Bra000188.1-P	Field mustard	plastid	29.26	33.67
Bra039733.1-P	Field mustard	nucleus, plastid	29.26	33.17
Bra016992.1-P	Field mustard	plastid	28.82	32.84
Bra004572.1-P	Field mustard	cytosol, mitochondrion, nucleus	29.69	30.49
Bra018320.1-P	Field mustard	mitochondrion	29.26	28.39
Bra032153.1-P	Field mustard	mitochondrion, nucleus	31.0	23.05
Bra012112.1-P	Field mustard	nucleus, plastid	29.69	20.12
Bra037142.1-P	Field mustard	nucleus, plastid	24.89	14.47

Protein Annotations

EnsemblPlants:Bra035698.1	EnsemblPlants:Bra035698.1-P	EnsemblPlantsGene:Bra035698	InterPro:IPR004883	InterPro:LOB	InterPro:Peptidase_S8_Ser-AS
ncoils:Coil	PANTHER:PTHR31301	PANTHER:PTHR31301:SF6	PFAM:PF03195	PFscan:PS50891	ScanProsite:PS00138
SEG:seg	UniParc:UPI0002543E44	UniProt:M4F3P8	MapMan:15.5.24	:	:

Description

AT2G28500 (E=2e-081) LBD11 | LBD11 (LOB DOMAIN-CONTAINING PROTEIN 11)

Coordinates

chrA04:-:12731349..12732755

Molecular Weight (calculated)

25159.7 Da

IEP (calculated)

4.542

GRAVY (calculated)

-0.320

Length

229 amino acids

Sequence
(BLAST)

001: MEINGGTSAA TPTVSAVAVA TVKETTTPIN SPSPTSSPPP PPLSPQQTVV LSPCAACKIL RRRCAEKCVL APYFPPTDPA KFTIAHRVFG ASNIIKFLQE
101: LPESQRTDAV NSMVYEAGAR MRDPVYGCAG AIYHLQRQVS ELQAQLVKTQ VELVSMQLQR SDLLELLYKM EQTKLAAQEQ GQQNMSFESS FESGDEFISS
201: PDEVTNDLGF LEDNNNNNSS MSWWDPLWT

Best Arabidopsis Sequence Match ( AT2G28500.1 )
(BLAST)

001: MLKMEINGGV ATPTASAVAK VTETTTPVNS PSPTSSPPPP PSPQQPPQPP VVLSPCAACK ILRRRCADKC VLAPYFPPTD PAKFTIAHRV FGASNIIKFL
101: QELPESQRTD AVNSMVYEAG ARMRDPVYGC AGAIYHLQRQ VSELQAQLAK TQVELVGMQL QRSSLLELIY NMEQTKLSVQ EQGQQKMSFE SSFESGDEFI
201: SSPDEESNDL GFLEDNNNNN NSSMSWWDPL WT

Arabidopsis Description

LBD11LOB domain-containing protein 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK08]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.